Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4918096..4918367 | Replicon | chromosome |
| Accession | NZ_CP035826 | ||
| Organism | Escherichia coli strain 67-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4918134..4918237 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4918096..4918367 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXA05_RS23975 | 4915253..4916692 | + | 1440 | WP_001383086.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EXA05_RS23980 | 4916810..4917046 | + | 237 | WP_001295499.1 | YebV family protein | - |
| EXA05_RS23985 | 4917151..4917342 | + | 192 | WP_001313035.1 | YebW family protein | - |
| EXA05_RS23990 | 4917343..4917999 | - | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| - | 4918096..4918367 | + | 272 | - | - | Antitoxin |
| - | 4918134..4918237 | - | 104 | - | - | Toxin |
| EXA05_RS23995 | 4918395..4918736 | - | 342 | WP_000976472.1 | YebY family protein | - |
| EXA05_RS24000 | 4918749..4919621 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| EXA05_RS24005 | 4919625..4919999 | - | 375 | WP_000168736.1 | CopC domain-containing protein YobA | - |
| EXA05_RS24010 | 4920138..4920368 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EXA05_RS24015 | 4920470..4921126 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| EXA05_RS24020 | 4921150..4921812 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T118660 NZ_CP035826:c4918237-4918134 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT118660 NZ_CP035826:4918096-4918367 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
