Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 625592..625863 | Replicon | chromosome |
| Accession | NZ_CP035819 | ||
| Organism | Escherichia coli strain WS3294A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 625630..625733 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 625592..625863 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXA07_RS03030 | 622749..624188 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EXA07_RS03035 | 624306..624542 | + | 237 | WP_001295499.1 | YebV family protein | - |
| EXA07_RS03040 | 624647..624838 | + | 192 | WP_001296140.1 | YebW family protein | - |
| EXA07_RS03045 | 624839..625495 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 625592..625863 | + | 272 | - | - | Antitoxin |
| - | 625630..625733 | - | 104 | - | - | Toxin |
| EXA07_RS03050 | 625891..626232 | - | 342 | WP_000976492.1 | YebY family protein | - |
| EXA07_RS03055 | 626245..627117 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| EXA07_RS03060 | 627121..627495 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| EXA07_RS03065 | 627634..627864 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EXA07_RS03070 | 627966..628622 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| EXA07_RS03075 | 628646..629308 | + | 663 | WP_216350907.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T118598 NZ_CP035819:c625733-625630 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT118598 NZ_CP035819:625592-625863 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
