Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4057723..4057994 | Replicon | chromosome |
| Accession | NZ_CP035812 | ||
| Organism | Escherichia coli strain B7A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4057761..4057864 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4057723..4057994 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXA09_RS19800 | 4054880..4056319 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EXA09_RS19805 | 4056437..4056673 | + | 237 | WP_001295499.1 | YebV family protein | - |
| EXA09_RS19810 | 4056778..4056969 | + | 192 | WP_000457842.1 | YebW family protein | - |
| EXA09_RS19815 | 4056970..4057626 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 4057723..4057994 | + | 272 | - | - | Antitoxin |
| - | 4057761..4057864 | - | 104 | - | - | Toxin |
| EXA09_RS19820 | 4058022..4058363 | - | 342 | WP_000976492.1 | YebY family protein | - |
| EXA09_RS19825 | 4058376..4059248 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| EXA09_RS19830 | 4059252..4059626 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| EXA09_RS19835 | 4059765..4059995 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EXA09_RS19840 | 4060097..4060753 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| EXA09_RS19845 | 4060777..4061439 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T118555 NZ_CP035812:c4057864-4057761 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT118555 NZ_CP035812:4057723-4057994 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
