Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2338754..2339022 | Replicon | chromosome |
| Accession | NZ_CP035767 | ||
| Organism | Escherichia coli O145 strain RM12522-C8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2338792..2338895 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2338754..2339022 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EW647_RS12075 | 2335911..2337350 | + | 1440 | WP_024221588.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EW647_RS12080 | 2337468..2337704 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EW647_RS12085 | 2337809..2338000 | + | 192 | WP_001313035.1 | YebW family protein | - |
| EW647_RS12090 | 2338001..2338657 | - | 657 | WP_000812714.1 | protein-serine/threonine phosphatase | - |
| - | 2338754..2339022 | + | 269 | - | - | Antitoxin |
| - | 2338792..2338895 | - | 104 | - | - | Toxin |
| EW647_RS12095 | 2339052..2339393 | - | 342 | WP_000976475.1 | YebY family protein | - |
| EW647_RS12100 | 2339406..2340278 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| EW647_RS12105 | 2340282..2340656 | - | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| EW647_RS12110 | 2340795..2341025 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EW647_RS12115 | 2341127..2341783 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| EW647_RS12120 | 2341807..2342469 | + | 663 | WP_000944252.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T118410 NZ_CP035767:c2338895-2338792 [Escherichia coli O145]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT118410 NZ_CP035767:2338754-2339022 [Escherichia coli O145]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
