Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1928952..1929103 | Replicon | chromosome |
| Accession | NZ_CP035738 | ||
| Organism | Enterobacter cloacae strain CZ-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1928987..1929090 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1928952..1929103 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EWI30_RS09485 | 1925434..1926096 | - | 663 | WP_028018644.1 | exodeoxyribonuclease X | - |
| EWI30_RS09490 | 1926121..1926771 | - | 651 | WP_114976901.1 | carbon-nitrogen hydrolase family protein | - |
| EWI30_RS09495 | 1926883..1927113 | - | 231 | WP_129995548.1 | DNA polymerase III subunit theta | - |
| EWI30_RS09500 | 1927251..1927622 | + | 372 | WP_129995549.1 | CopC domain-containing protein YobA | - |
| EWI30_RS09505 | 1927624..1928493 | + | 870 | WP_129995550.1 | copper homeostasis membrane protein CopD | - |
| EWI30_RS09510 | 1928510..1928848 | + | 339 | WP_114976905.1 | YebY family protein | - |
| - | 1928952..1929103 | - | 152 | - | - | Antitoxin |
| - | 1928987..1929090 | + | 104 | - | - | Toxin |
| EWI30_RS09515 | 1929256..1930197 | - | 942 | WP_129995551.1 | VirK/YbjX family protein | - |
| EWI30_RS09520 | 1930373..1931017 | + | 645 | WP_129995552.1 | protein-serine/threonine phosphatase | - |
| EWI30_RS09525 | 1931052..1931291 | - | 240 | WP_028018652.1 | DUF1480 family protein | - |
| EWI30_RS09530 | 1931398..1932840 | - | 1443 | WP_129995553.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T118349 NZ_CP035738:1928987-1929090 [Enterobacter cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT118349 NZ_CP035738:c1929103-1928952 [Enterobacter cloacae]
CTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
