Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/YafN(antitoxin) |
| Location | 266614..267179 | Replicon | chromosome |
| Accession | NZ_CP035731 | ||
| Organism | Vibrio vulnificus strain 2142-77 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | A0A0H2MSY5 |
| Locus tag | EPB55_RS01135 | Protein ID | WP_015296903.1 |
| Coordinates | 266614..266901 (-) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | EPB55_RS01140 | Protein ID | WP_130194939.1 |
| Coordinates | 266898..267179 (-) | Length | 94 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EPB55_RS01080 | 262693..263090 | + | 398 | Protein_217 | transposase | - |
| EPB55_RS01085 | 263091..263201 | - | 111 | Protein_218 | DUF3265 domain-containing protein | - |
| EPB55_RS01090 | 263263..263493 | + | 231 | WP_011150352.1 | PAS factor family protein | - |
| EPB55_RS23475 | 263561..263671 | - | 111 | WP_165387133.1 | DUF3265 domain-containing protein | - |
| EPB55_RS01100 | 264022..264150 | - | 129 | WP_130194946.1 | DUF3265 domain-containing protein | - |
| EPB55_RS01105 | 264165..264782 | - | 618 | WP_065090383.1 | HAD family phosphatase | - |
| EPB55_RS01110 | 264798..264888 | - | 91 | Protein_223 | DUF3265 domain-containing protein | - |
| EPB55_RS01115 | 264943..265212 | - | 270 | WP_005492798.1 | Txe/YoeB family addiction module toxin | - |
| EPB55_RS01120 | 265205..265459 | - | 255 | WP_005492799.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | - |
| EPB55_RS01125 | 265551..265673 | - | 123 | WP_103278039.1 | DUF3265 domain-containing protein | - |
| EPB55_RS01130 | 266006..266134 | - | 129 | Protein_227 | DUF3265 domain-containing protein | - |
| EPB55_RS23480 | 266494..266586 | - | 93 | WP_193783921.1 | DUF3265 domain-containing protein | - |
| EPB55_RS01135 | 266614..266901 | - | 288 | WP_015296903.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| EPB55_RS01140 | 266898..267179 | - | 282 | WP_130194939.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| EPB55_RS01150 | 267477..268445 | + | 969 | WP_130195236.1 | IS30-like element ISVa6 family transposase | - |
| EPB55_RS01155 | 268471..269286 | - | 816 | WP_130195233.1 | PhzF family phenazine biosynthesis protein | - |
| EPB55_RS01160 | 269256..269345 | - | 90 | WP_130195232.1 | DUF3265 domain-containing protein | - |
| EPB55_RS01165 | 269380..269781 | - | 402 | WP_130195231.1 | DUF4144 domain-containing protein | - |
| EPB55_RS01170 | 269864..270241 | - | 378 | WP_025628121.1 | DUF4440 domain-containing protein | - |
| EPB55_RS01175 | 270225..270404 | - | 180 | WP_130198040.1 | DUF3265 domain-containing protein | - |
| EPB55_RS01180 | 270386..270817 | - | 432 | WP_154142293.1 | hypothetical protein | - |
| EPB55_RS01185 | 270836..270937 | - | 102 | WP_130195245.1 | DUF3265 domain-containing protein | - |
| EPB55_RS01190 | 270960..271307 | - | 348 | WP_043920995.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | - | 153034..526547 | 373513 | |
| - | flank | IS/Tn | - | - | 267810..268445 | 635 | |
| - | inside | Integron | - | - | 263263..314527 | 51264 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11003.69 Da Isoelectric Point: 5.1098
>T118338 WP_015296903.1 NZ_CP035731:c266901-266614 [Vibrio vulnificus]
MKVVWSPLALQKLGDAAEFISLDNPPAAEKWVNEVFDKTELLGSMPEMGRFVPEMPHTNYREIIFGHYRIIYSLSHEIRV
LTVRNCRQILSEDDV
MKVVWSPLALQKLGDAAEFISLDNPPAAEKWVNEVFDKTELLGSMPEMGRFVPEMPHTNYREIIFGHYRIIYSLSHEIRV
LTVRNCRQILSEDDV
Download Length: 288 bp
>T118338 NZ_CP035731:c266901-266614 [Vibrio vulnificus]
ATGAAAGTAGTCTGGTCTCCATTAGCACTTCAGAAACTAGGTGATGCAGCGGAGTTTATTTCTTTGGATAATCCACCTGC
GGCAGAGAAGTGGGTAAACGAAGTTTTTGATAAAACTGAACTCCTTGGAAGTATGCCTGAAATGGGGCGGTTTGTTCCTG
AAATGCCCCATACGAATTATCGTGAAATCATCTTTGGTCACTATCGTATTATCTACAGTTTAAGCCACGAAATTCGCGTA
CTAACAGTTCGTAATTGTCGTCAAATTTTATCGGAAGATGACGTGTAA
ATGAAAGTAGTCTGGTCTCCATTAGCACTTCAGAAACTAGGTGATGCAGCGGAGTTTATTTCTTTGGATAATCCACCTGC
GGCAGAGAAGTGGGTAAACGAAGTTTTTGATAAAACTGAACTCCTTGGAAGTATGCCTGAAATGGGGCGGTTTGTTCCTG
AAATGCCCCATACGAATTATCGTGAAATCATCTTTGGTCACTATCGTATTATCTACAGTTTAAGCCACGAAATTCGCGTA
CTAACAGTTCGTAATTGTCGTCAAATTTTATCGGAAGATGACGTGTAA
Antitoxin
Download Length: 94 a.a. Molecular weight: 10459.00 Da Isoelectric Point: 5.8650
>AT118338 WP_130194939.1 NZ_CP035731:c267179-266898 [Vibrio vulnificus]
MSRIHFDQDIQPLSEFRAGVASYIKQINETRRPLVITQRGKGVAVVLDVAEYEAMQEKIELLEEMRTAEAQLASGLGVFN
DDARAQVLGRIKK
MSRIHFDQDIQPLSEFRAGVASYIKQINETRRPLVITQRGKGVAVVLDVAEYEAMQEKIELLEEMRTAEAQLASGLGVFN
DDARAQVLGRIKK
Download Length: 282 bp
>AT118338 NZ_CP035731:c267179-266898 [Vibrio vulnificus]
ATGAGTCGTATTCATTTCGATCAAGATATTCAGCCTTTGTCTGAGTTTCGTGCCGGTGTAGCTTCATACATCAAACAAAT
CAATGAGACTCGTCGTCCATTGGTTATTACGCAACGTGGCAAAGGTGTTGCTGTTGTTCTCGATGTTGCTGAGTATGAAG
CAATGCAAGAGAAAATCGAATTACTGGAAGAAATGCGCACAGCAGAAGCTCAGTTAGCTTCTGGTCTCGGTGTTTTCAAT
GATGATGCACGTGCTCAAGTACTTGGGCGCATTAAGAAATGA
ATGAGTCGTATTCATTTCGATCAAGATATTCAGCCTTTGTCTGAGTTTCGTGCCGGTGTAGCTTCATACATCAAACAAAT
CAATGAGACTCGTCGTCCATTGGTTATTACGCAACGTGGCAAAGGTGTTGCTGTTGTTCTCGATGTTGCTGAGTATGAAG
CAATGCAAGAGAAAATCGAATTACTGGAAGAAATGCGCACAGCAGAAGCTCAGTTAGCTTCTGGTCTCGGTGTTTTCAAT
GATGATGCACGTGCTCAAGTACTTGGGCGCATTAAGAAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|