Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-Phd |
| Location | 564179..564726 | Replicon | chromosome |
| Accession | NZ_CP035689 | ||
| Organism | Vibrio metoecus strain 08-2459 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | EWA65_RS16195 | Protein ID | WP_154139265.1 |
| Coordinates | 564179..564481 (-) | Length | 101 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | Q9KM93 |
| Locus tag | EWA65_RS16200 | Protein ID | WP_000861987.1 |
| Coordinates | 564469..564726 (-) | Length | 86 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EWA65_RS16140 | 559538..559659 | - | 122 | Protein_571 | DUF3265 domain-containing protein | - |
| EWA65_RS16145 | 560007..560117 | - | 111 | WP_086017781.1 | DUF3265 domain-containing protein | - |
| EWA65_RS16150 | 560584..560898 | - | 315 | WP_000071008.1 | DNA-binding transcriptional regulator | - |
| EWA65_RS16155 | 560885..561217 | - | 333 | WP_000843587.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| EWA65_RS16160 | 561407..561844 | - | 438 | WP_055028344.1 | NUDIX pyrophosphatase | - |
| EWA65_RS16165 | 562007..562222 | - | 216 | WP_154139263.1 | DUF645 family protein | - |
| EWA65_RS16175 | 562651..562911 | - | 261 | WP_162807037.1 | DUF3709 domain-containing protein | - |
| EWA65_RS16180 | 562881..563030 | - | 150 | Protein_578 | DUF3709 domain-containing protein | - |
| EWA65_RS16185 | 563030..563170 | - | 141 | WP_195708057.1 | DUF3265 domain-containing protein | - |
| EWA65_RS16190 | 563686..563874 | - | 189 | Protein_580 | DUF645 family protein | - |
| EWA65_RS16195 | 564179..564481 | - | 303 | WP_154139265.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| EWA65_RS16200 | 564469..564726 | - | 258 | WP_000861987.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| EWA65_RS16205 | 564917..565276 | - | 360 | WP_055028343.1 | VOC family protein | - |
| EWA65_RS16215 | 565429..565815 | - | 387 | WP_055028342.1 | MmcQ/YjbR family DNA-binding protein | - |
| EWA65_RS16220 | 565957..566349 | - | 393 | WP_095457973.1 | nuclear transport factor 2 family protein | - |
| EWA65_RS16225 | 566546..566728 | - | 183 | WP_009355233.1 | DUF645 family protein | - |
| EWA65_RS16230 | 567032..567955 | - | 924 | Protein_587 | arginase family protein | - |
| EWA65_RS16235 | 568126..568392 | - | 267 | WP_043993103.1 | hypothetical protein | - |
| EWA65_RS16240 | 568614..569129 | - | 516 | WP_114808324.1 | lipocalin family protein | - |
| EWA65_RS18880 | 569325..569421 | - | 97 | Protein_590 | DUF645 family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integron | - | - | 453640..607302 | 153662 | |
| - | inside | Integrative and Conjugative Element | - | hlyA | 504927..845208 | 340281 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 11684.62 Da Isoelectric Point: 4.8837
>T118265 WP_154139265.1 NZ_CP035689:c564481-564179 [Vibrio metoecus]
MVEIIWTEPALSDLNDIAEYIALENVVAAKQLVQTVFTKVECLADFPESGRVPPELEHLNYREVVVNPCRVFYKYDDAKV
RILFVMRAERDLRRLMLTKQ
MVEIIWTEPALSDLNDIAEYIALENVVAAKQLVQTVFTKVECLADFPESGRVPPELEHLNYREVVVNPCRVFYKYDDAKV
RILFVMRAERDLRRLMLTKQ
Download Length: 303 bp
>T118265 NZ_CP035689:c564481-564179 [Vibrio metoecus]
ATGGTTGAAATAATTTGGACGGAGCCGGCTCTATCCGACTTGAATGATATTGCTGAATACATCGCGCTTGAAAATGTCGT
GGCTGCTAAACAACTGGTGCAAACCGTTTTTACAAAAGTTGAATGTTTGGCCGATTTTCCAGAGTCTGGGCGCGTCCCTC
CAGAACTAGAACACCTCAATTATCGTGAAGTCGTTGTAAATCCGTGTCGTGTTTTCTACAAGTATGATGATGCAAAGGTT
CGTATTCTTTTTGTTATGCGTGCGGAGCGAGATTTGCGTCGGTTAATGCTTACGAAACAGTAG
ATGGTTGAAATAATTTGGACGGAGCCGGCTCTATCCGACTTGAATGATATTGCTGAATACATCGCGCTTGAAAATGTCGT
GGCTGCTAAACAACTGGTGCAAACCGTTTTTACAAAAGTTGAATGTTTGGCCGATTTTCCAGAGTCTGGGCGCGTCCCTC
CAGAACTAGAACACCTCAATTATCGTGAAGTCGTTGTAAATCCGTGTCGTGTTTTCTACAAGTATGATGATGCAAAGGTT
CGTATTCTTTTTGTTATGCGTGCGGAGCGAGATTTGCGTCGGTTAATGCTTACGAAACAGTAG
Antitoxin
Download Length: 86 a.a. Molecular weight: 9647.15 Da Isoelectric Point: 7.3178
>AT118265 WP_000861987.1 NZ_CP035689:c564726-564469 [Vibrio metoecus]
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLIDVDDYEFMQNRLAILEGIARGERALADGKVVSHQDAKDRM
SKWLK
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLIDVDDYEFMQNRLAILEGIARGERALADGKVVSHQDAKDRM
SKWLK
Download Length: 258 bp
>AT118265 NZ_CP035689:c564726-564469 [Vibrio metoecus]
ATGAAAGTAGAACTTGTGACGTCACTAAAACGTCAGGCCACTAAGATCCTTGCCGATCTTCATGATACGAAAGAGCCAGT
ATTGATAACTGAGCACGGAAAACCGTCAGCTTACCTTATTGATGTAGACGACTATGAATTTATGCAAAATCGTTTAGCGA
TCCTGGAAGGTATTGCTCGCGGAGAGCGAGCTTTAGCTGATGGTAAAGTGGTCAGCCATCAAGATGCTAAGGACAGAATG
TCAAAATGGTTGAAATAA
ATGAAAGTAGAACTTGTGACGTCACTAAAACGTCAGGCCACTAAGATCCTTGCCGATCTTCATGATACGAAAGAGCCAGT
ATTGATAACTGAGCACGGAAAACCGTCAGCTTACCTTATTGATGTAGACGACTATGAATTTATGCAAAATCGTTTAGCGA
TCCTGGAAGGTATTGCTCGCGGAGAGCGAGCTTTAGCTGATGGTAAAGTGGTCAGCCATCAAGATGCTAAGGACAGAATG
TCAAAATGGTTGAAATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|