Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RelE-RelB |
| Location | 493707..494266 | Replicon | chromosome |
| Accession | NZ_CP035689 | ||
| Organism | Vibrio metoecus strain 08-2459 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | EWA65_RS15500 | Protein ID | WP_055028440.1 |
| Coordinates | 493988..494266 (+) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A0N8UHC9 |
| Locus tag | EWA65_RS15495 | Protein ID | WP_000381185.1 |
| Coordinates | 493707..493991 (+) | Length | 95 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EWA65_RS15450 | 488752..488881 | - | 130 | Protein_446 | DUF645 family protein | - |
| EWA65_RS15455 | 489281..489460 | - | 180 | WP_154139237.1 | DUF645 family protein | - |
| EWA65_RS15460 | 489762..490202 | - | 441 | WP_033933262.1 | hypothetical protein | - |
| EWA65_RS15465 | 490236..490346 | - | 111 | WP_154139386.1 | DUF3265 domain-containing protein | - |
| EWA65_RS15470 | 490349..491251 | - | 903 | WP_055028442.1 | hypothetical protein | - |
| EWA65_RS15475 | 491387..491671 | - | 285 | WP_055028441.1 | antibiotic biosynthesis monooxygenase | - |
| EWA65_RS15480 | 491959..492194 | + | 236 | Protein_452 | RNA-binding protein | - |
| EWA65_RS15485 | 492383..492772 | - | 390 | WP_055052207.1 | VOC family protein | - |
| EWA65_RS15490 | 492977..493558 | - | 582 | WP_175242889.1 | nucleotidyltransferase family protein | - |
| EWA65_RS15495 | 493707..493991 | + | 285 | WP_000381185.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| EWA65_RS15500 | 493988..494266 | + | 279 | WP_055028440.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin |
| EWA65_RS15505 | 494433..494981 | - | 549 | WP_095459700.1 | hypothetical protein | - |
| EWA65_RS15510 | 495324..495788 | + | 465 | WP_055028448.1 | hypothetical protein | - |
| EWA65_RS15515 | 495861..496142 | - | 282 | WP_000382665.1 | hypothetical protein | - |
| EWA65_RS18860 | 496142..496231 | - | 90 | WP_195708051.1 | acetyltransferase | - |
| EWA65_RS15520 | 496347..496631 | + | 285 | WP_000381183.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| EWA65_RS15525 | 496628..496906 | + | 279 | WP_000578475.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | - |
| EWA65_RS15530 | 497065..497331 | - | 267 | WP_043993103.1 | hypothetical protein | - |
| EWA65_RS15535 | 497558..497947 | - | 390 | WP_055028449.1 | VOC family protein | - |
| EWA65_RS15540 | 498616..499131 | - | 516 | WP_055028451.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integron | - | - | 453640..607302 | 153662 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10895.66 Da Isoelectric Point: 4.8605
>T118261 WP_055028440.1 NZ_CP035689:493988-494266 [Vibrio metoecus]
MIFWEEASLNDREKIFEFLYDFNPVAAEKTDELIETKVENLLEQPLMGVQRNGIRGRLLIIPEISMIVSYWVDGSKIRIM
RVLHQKQKFPND
MIFWEEASLNDREKIFEFLYDFNPVAAEKTDELIETKVENLLEQPLMGVQRNGIRGRLLIIPEISMIVSYWVDGSKIRIM
RVLHQKQKFPND
Download Length: 279 bp
>T118261 NZ_CP035689:493988-494266 [Vibrio metoecus]
ATGATTTTCTGGGAAGAAGCATCTCTCAATGATCGTGAGAAAATTTTCGAATTTCTTTACGACTTTAACCCAGTAGCAGC
TGAAAAAACGGATGAGCTCATAGAAACCAAAGTTGAAAATTTGCTTGAGCAACCACTAATGGGTGTTCAGCGTAATGGCA
TTAGAGGCAGATTGCTTATTATCCCTGAGATATCAATGATTGTTTCGTATTGGGTTGATGGTTCTAAAATTCGAATAATG
CGTGTACTACATCAGAAACAAAAATTTCCAAACGATTGA
ATGATTTTCTGGGAAGAAGCATCTCTCAATGATCGTGAGAAAATTTTCGAATTTCTTTACGACTTTAACCCAGTAGCAGC
TGAAAAAACGGATGAGCTCATAGAAACCAAAGTTGAAAATTTGCTTGAGCAACCACTAATGGGTGTTCAGCGTAATGGCA
TTAGAGGCAGATTGCTTATTATCCCTGAGATATCAATGATTGTTTCGTATTGGGTTGATGGTTCTAAAATTCGAATAATG
CGTGTACTACATCAGAAACAAAAATTTCCAAACGATTGA
Antitoxin
Download Length: 95 a.a. Molecular weight: 10887.22 Da Isoelectric Point: 8.0775
>AT118261 WP_000381185.1 NZ_CP035689:493707-493991 [Vibrio metoecus]
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKALSHDAWLTEQVNQAFEKFDSGKAVFVEHDIAKAR
MAERKAKIRNRGHA
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKALSHDAWLTEQVNQAFEKFDSGKAVFVEHDIAKAR
MAERKAKIRNRGHA
Download Length: 285 bp
>AT118261 NZ_CP035689:493707-493991 [Vibrio metoecus]
ATGGATACTAGAATTCAATTTCGTGTAGACGAAGAAACAAAACGTTTAGCTCAACAAATGGCTGAAAGCCAAGGTCGAAC
TCTTAGCGATGCTTGCCGTGAACTCACTGAACAATTAGCTGAGCAGCAACGCAAGGCATTATCTCACGATGCATGGCTAA
CTGAACAAGTGAATCAAGCATTTGAGAAGTTCGACTCAGGAAAAGCGGTATTCGTTGAACATGACATCGCCAAAGCACGA
ATGGCTGAACGTAAAGCTAAAATCCGAAATCGAGGCCACGCATGA
ATGGATACTAGAATTCAATTTCGTGTAGACGAAGAAACAAAACGTTTAGCTCAACAAATGGCTGAAAGCCAAGGTCGAAC
TCTTAGCGATGCTTGCCGTGAACTCACTGAACAATTAGCTGAGCAGCAACGCAAGGCATTATCTCACGATGCATGGCTAA
CTGAACAAGTGAATCAAGCATTTGAGAAGTTCGACTCAGGAAAAGCGGTATTCGTTGAACATGACATCGCCAAAGCACGA
ATGGCTGAACGTAAAGCTAAAATCCGAAATCGAGGCCACGCATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|