Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 1064084..1064649 | Replicon | chromosome |
| Accession | NZ_CP035687 | ||
| Organism | Vibrio metoecus strain 2011V-1169 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | D7HCW8 |
| Locus tag | EPB59_RS18300 | Protein ID | WP_000869999.1 |
| Coordinates | 1064362..1064649 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | EPB59_RS18295 | Protein ID | WP_195707145.1 |
| Coordinates | 1064084..1064365 (+) | Length | 94 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EPB59_RS18240 | 1059214..1059582 | + | 369 | WP_154174200.1 | VOC family protein | - |
| EPB59_RS18245 | 1059690..1060379 | + | 690 | WP_154174272.1 | FMN-binding negative transcriptional regulator | - |
| EPB59_RS18250 | 1060573..1060962 | + | 390 | WP_057552792.1 | VOC family protein | - |
| EPB59_RS18255 | 1061263..1061469 | + | 207 | WP_154173249.1 | DUF3709 domain-containing protein | - |
| EPB59_RS18260 | 1061704..1062075 | + | 372 | WP_045613002.1 | DUF4144 domain-containing protein | - |
| EPB59_RS18265 | 1062110..1062199 | + | 90 | WP_154174189.1 | DUF3265 domain-containing protein | - |
| EPB59_RS18270 | 1062373..1062554 | + | 182 | Protein_975 | DUF645 family protein | - |
| EPB59_RS18275 | 1062704..1062864 | + | 161 | Protein_976 | hypothetical protein | - |
| EPB59_RS18280 | 1062885..1063118 | + | 234 | WP_154174274.1 | DUF3709 domain-containing protein | - |
| EPB59_RS18285 | 1063388..1063885 | + | 498 | WP_045612995.1 | ATP-binding protein | - |
| EPB59_RS18290 | 1063876..1064061 | + | 186 | WP_154174277.1 | DUF3265 domain-containing protein | - |
| EPB59_RS18295 | 1064084..1064365 | + | 282 | WP_195707145.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| EPB59_RS18300 | 1064362..1064649 | + | 288 | WP_000869999.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| EPB59_RS18305 | 1064958..1065140 | + | 183 | WP_000923330.1 | DUF645 family protein | - |
| EPB59_RS18310 | 1065393..1065782 | + | 390 | WP_195707146.1 | VOC family protein | - |
| EPB59_RS18315 | 1065938..1066324 | + | 387 | WP_154174205.1 | MmcQ/YjbR family DNA-binding protein | - |
| EPB59_RS18320 | 1066622..1066801 | + | 180 | WP_154174206.1 | DUF645 family protein | - |
| EPB59_RS18325 | 1067155..1067337 | + | 183 | Protein_986 | DUF645 family protein | - |
| EPB59_RS18330 | 1067700..1067870 | + | 171 | WP_033929208.1 | DUF645 family protein | - |
| EPB59_RS18340 | 1068521..1068763 | + | 243 | WP_154173321.1 | hypothetical protein | - |
| EPB59_RS18345 | 1069056..1069280 | + | 225 | WP_195707147.1 | DUF3709 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integron | - | cqsA / ugd / hlyA / vgrG-3 / vasL / icmF/vasK / vasJ / vasJ / vasI / vasH / clpB/vasG / vasF / vasE / vasD / vasC / vasB / vasA / VCA0109 / vipB/mglB / vipA/mglA / vgrG-2 / hcp-2 / hlyA | 3..1074150 | 1074147 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 10997.74 Da Isoelectric Point: 6.0710
>T118258 WP_000869999.1 NZ_CP035687:1064362-1064649 [Vibrio metoecus]
MKVVWSPLALQKLGDAAEFIALDNPSAAEKWVNEVFDKTELLGSMPEMGRMVPEMPHTNYREIIFGHYRIIYSLSHEIRV
LTVRNCRQLLTEHDV
MKVVWSPLALQKLGDAAEFIALDNPSAAEKWVNEVFDKTELLGSMPEMGRMVPEMPHTNYREIIFGHYRIIYSLSHEIRV
LTVRNCRQLLTEHDV
Download Length: 288 bp
>T118258 NZ_CP035687:1064362-1064649 [Vibrio metoecus]
ATGAAAGTAGTTTGGTCACCTCTAGCGTTACAAAAACTGGGTGATGCCGCAGAGTTTATTGCTTTGGATAACCCATCAGC
TGCAGAAAAGTGGGTGAATGAAGTATTCGACAAAACGGAATTGCTCGGCTCAATGCCAGAAATGGGCCGCATGGTTCCTG
AAATGCCTCATACGAACTACCGTGAAATAATTTTTGGTCATTACCGCATTATTTATAGTTTGAGCCACGAAATCCGCGTT
CTAACAGTTCGTAACTGTCGTCAATTGCTCACGGAACATGATGTGTGA
ATGAAAGTAGTTTGGTCACCTCTAGCGTTACAAAAACTGGGTGATGCCGCAGAGTTTATTGCTTTGGATAACCCATCAGC
TGCAGAAAAGTGGGTGAATGAAGTATTCGACAAAACGGAATTGCTCGGCTCAATGCCAGAAATGGGCCGCATGGTTCCTG
AAATGCCTCATACGAACTACCGTGAAATAATTTTTGGTCATTACCGCATTATTTATAGTTTGAGCCACGAAATCCGCGTT
CTAACAGTTCGTAACTGTCGTCAATTGCTCACGGAACATGATGTGTGA
Antitoxin
Download Length: 94 a.a. Molecular weight: 10380.97 Da Isoelectric Point: 5.1745
>AT118258 WP_195707145.1 NZ_CP035687:1064084-1064365 [Vibrio metoecus]
MSRIRLDQDIQPLSEFRAGVASFIKQINETRRPLVITQRGKGVAVVLDVAEYEAMQEKIELLEEMRTAEAQLAAGLGISN
EDARSQVLGRIIK
MSRIRLDQDIQPLSEFRAGVASFIKQINETRRPLVITQRGKGVAVVLDVAEYEAMQEKIELLEEMRTAEAQLAAGLGISN
EDARSQVLGRIIK
Download Length: 282 bp
>AT118258 NZ_CP035687:1064084-1064365 [Vibrio metoecus]
ATGAGCCGTATTCGCCTTGATCAAGATATTCAGCCTTTGTCTGAGTTCCGTGCTGGCGTTGCATCATTTATCAAACAGAT
CAATGAAACTCGCCGACCATTGGTTATTACACAACGAGGTAAAGGTGTAGCCGTTGTTCTTGACGTTGCGGAGTATGAAG
CAATGCAAGAGAAAATCGAATTACTCGAAGAAATGCGTACTGCAGAAGCTCAATTGGCTGCAGGTTTAGGTATATCAAAC
GAAGATGCTCGTTCACAAGTTCTGGGGCGCATCATCAAATGA
ATGAGCCGTATTCGCCTTGATCAAGATATTCAGCCTTTGTCTGAGTTCCGTGCTGGCGTTGCATCATTTATCAAACAGAT
CAATGAAACTCGCCGACCATTGGTTATTACACAACGAGGTAAAGGTGTAGCCGTTGTTCTTGACGTTGCGGAGTATGAAG
CAATGCAAGAGAAAATCGAATTACTCGAAGAAATGCGTACTGCAGAAGCTCAATTGGCTGCAGGTTTAGGTATATCAAAC
GAAGATGCTCGTTCACAAGTTCTGGGGCGCATCATCAAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|