Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3987215..3987363 | Replicon | chromosome |
| Accession | NZ_CP035676 | ||
| Organism | Salmonella bongori strain 04-0440 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3987222..3987325 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3987215..3987363 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EWI73_RS18720 | 3983379..3984101 | - | 723 | WP_219344810.1 | type III secretion system guanine nucleotide exchange factor SopE2 | - |
| EWI73_RS18725 | 3984727..3985203 | + | 477 | WP_219344812.1 | hypothetical protein | - |
| EWI73_RS18730 | 3985795..3986937 | + | 1143 | WP_038391785.1 | lipopolysaccharide N-acetylglucosaminyltransferase | - |
| - | 3987215..3987363 | + | 149 | - | - | Antitoxin |
| - | 3987222..3987325 | - | 104 | - | - | Toxin |
| EWI73_RS18735 | 3987469..3987819 | - | 351 | WP_219344814.1 | YebY family protein | - |
| EWI73_RS18740 | 3987836..3988711 | - | 876 | WP_219344816.1 | copper homeostasis membrane protein CopD | - |
| EWI73_RS18745 | 3988712..3989086 | - | 375 | WP_219344818.1 | CopC domain-containing protein YobA | - |
| EWI73_RS18750 | 3989224..3989454 | + | 231 | WP_000856226.1 | DNA polymerase III subunit theta | - |
| EWI73_RS18755 | 3989562..3990218 | + | 657 | WP_219344820.1 | carbon-nitrogen hydrolase family protein | - |
| EWI73_RS18760 | 3990242..3990931 | + | 690 | WP_000944290.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T118231 NZ_CP035676:c3987325-3987222 [Salmonella bongori]
GGCAGGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 149 bp
>AT118231 NZ_CP035676:3987215-3987363 [Salmonella bongori]
AACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCCTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
AACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCCTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
