Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3717230..3717340 | Replicon | chromosome |
| Accession | NZ_CP035668 | ||
| Organism | Edwardsiella piscicida strain MS-18-199 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3717232..3717333 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3717230..3717340 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EVK84_RS17110 | 3712864..3713487 | + | 624 | WP_012848489.1 | response regulator | - |
| EVK84_RS17115 | 3713545..3713823 | + | 279 | WP_015461422.1 | DUF134 domain-containing protein | - |
| EVK84_RS17120 | 3713834..3714307 | + | 474 | WP_012848486.1 | NifB/NifX family molybdenum-iron cluster-binding protein | - |
| EVK84_RS17125 | 3714380..3715185 | + | 806 | Protein_3285 | hypothetical protein | - |
| EVK84_RS17130 | 3715212..3715571 | - | 360 | WP_012848484.1 | hypothetical protein | - |
| EVK84_RS17135 | 3715659..3716216 | - | 558 | WP_012848483.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| - | 3717230..3717340 | + | 111 | - | - | Antitoxin |
| - | 3717232..3717333 | - | 102 | - | - | Toxin |
| EVK84_RS17140 | 3717415..3719097 | - | 1683 | WP_129986304.1 | hypothetical protein | - |
| EVK84_RS18910 | 3721642..3722310 | - | 669 | Protein_3289 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3712864..3820549 | 107685 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 bp
>T118199 NZ_CP035668:c3717333-3717232 [Edwardsiella piscicida]
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT
Antitoxin
Download Length: 111 bp
>AT118199 NZ_CP035668:3717230-3717340 [Edwardsiella piscicida]
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA
