Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2276549..2276693 | Replicon | chromosome |
| Accession | NZ_CP035633 | ||
| Organism | Enterobacter cloacae strain EN3600 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2276555..2276658 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2276549..2276693 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EVV94_RS11245 | 2271706..2273154 | + | 1449 | WP_205742266.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EVV94_RS11250 | 2273261..2273500 | + | 240 | WP_008500472.1 | YebV family protein | - |
| EVV94_RS11255 | 2273535..2274179 | - | 645 | WP_094935589.1 | protein-serine/threonine phosphatase | - |
| EVV94_RS11260 | 2274346..2275287 | + | 942 | WP_094935590.1 | VirK/YbjX family protein | - |
| EVV94_RS11265 | 2275461..2276357 | + | 897 | WP_094935591.1 | benzoate transporter | - |
| - | 2276549..2276693 | + | 145 | - | - | Antitoxin |
| - | 2276555..2276658 | - | 104 | - | - | Toxin |
| EVV94_RS11270 | 2276797..2277135 | - | 339 | WP_033145840.1 | YebY family protein | - |
| EVV94_RS11275 | 2277152..2278021 | - | 870 | WP_094935592.1 | copper homeostasis membrane protein CopD | - |
| EVV94_RS11280 | 2278023..2278394 | - | 372 | WP_094935593.1 | CopC domain-containing protein YobA | - |
| EVV94_RS11285 | 2278531..2278761 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| EVV94_RS11290 | 2278872..2279522 | + | 651 | WP_033145843.1 | carbon-nitrogen hydrolase family protein | - |
| EVV94_RS11295 | 2279547..2280209 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T118160 NZ_CP035633:c2276658-2276555 [Enterobacter cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT118160 NZ_CP035633:2276549-2276693 [Enterobacter cloacae]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
