Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2589173..2589318 | Replicon | chromosome |
| Accession | NZ_CP035531 | ||
| Organism | Klebsiella pneumoniae strain NFYY0065 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2589180..2589282 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2589173..2589318 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EI683_RS12910 | 2584704..2586137 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EI683_RS12915 | 2586253..2586492 | + | 240 | WP_002911393.1 | YebV family protein | - |
| EI683_RS12920 | 2586590..2586781 | + | 192 | WP_002911395.1 | YebW family protein | - |
| EI683_RS12925 | 2586778..2587431 | - | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| EI683_RS12930 | 2587588..2588556 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| EI683_RS26485 | 2588661..2588804 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 2589173..2589318 | + | 146 | - | - | Antitoxin |
| - | 2589180..2589282 | - | 103 | - | - | Toxin |
| EI683_RS12940 | 2589441..2589779 | - | 339 | WP_009307539.1 | YebY family protein | - |
| EI683_RS12945 | 2589796..2590665 | - | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| EI683_RS12950 | 2590669..2591043 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| EI683_RS12955 | 2591156..2591386 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| EI683_RS12960 | 2591465..2592124 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| EI683_RS12965 | 2592128..2594188 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T118069 NZ_CP035531:c2589282-2589180 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT118069 NZ_CP035531:2589173-2589318 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
