Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2363506..2363774 | Replicon | chromosome |
| Accession | NZ_CP035498 | ||
| Organism | Escherichia coli strain 04-00955 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2363634..2363736 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2363506..2363774 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EQO00_RS11295 | 2360060..2360722 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EQO00_RS11300 | 2360745..2361401 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| EQO00_RS11305 | 2361503..2361733 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EQO00_RS11310 | 2361872..2362246 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EQO00_RS11315 | 2362250..2363122 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| EQO00_RS11320 | 2363135..2363476 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2363506..2363774 | - | 269 | - | - | Antitoxin |
| - | 2363634..2363736 | + | 103 | - | - | Toxin |
| EQO00_RS11325 | 2363871..2364527 | + | 657 | WP_000812742.1 | protein-serine/threonine phosphatase | - |
| EQO00_RS11330 | 2364528..2364719 | - | 192 | WP_001317886.1 | YebW family protein | - |
| EQO00_RS11335 | 2364824..2365060 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EQO00_RS11340 | 2365178..2366617 | - | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T117990 NZ_CP035498:2363634-2363736 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT117990 NZ_CP035498:c2363774-2363506 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
