Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1995569..1995837 | Replicon | chromosome |
| Accession | NZ_CP035486 | ||
| Organism | Escherichia coli strain NissleGFP_pZE21 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1995607..1995709 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1995569..1995837 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EUJ32_RS09930 | 1992726..1994165 | + | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EUJ32_RS09935 | 1994283..1994519 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EUJ32_RS09940 | 1994624..1994815 | + | 192 | WP_001317886.1 | YebW family protein | - |
| EUJ32_RS09945 | 1994816..1995472 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 1995569..1995837 | + | 269 | - | - | Antitoxin |
| - | 1995607..1995709 | - | 103 | - | - | Toxin |
| EUJ32_RS09950 | 1995867..1996208 | - | 342 | WP_000984819.1 | YebY family protein | - |
| EUJ32_RS09955 | 1996221..1997093 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| EUJ32_RS09960 | 1997097..1997471 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EUJ32_RS09965 | 1997610..1997840 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EUJ32_RS09970 | 1997943..1998599 | + | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| EUJ32_RS09975 | 1998623..1999285 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T117951 NZ_CP035486:c1995709-1995607 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT117951 NZ_CP035486:1995569-1995837 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
