Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4693928..4694135 | Replicon | chromosome |
| Accession | NZ_CP035382 | ||
| Organism | Leclercia adecarboxylata strain R25 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4693967..4694069 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4693928..4694135 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ES815_RS23395 | 4689960..4691402 | + | 1443 | WP_142489951.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ES815_RS23400 | 4691507..4691746 | + | 240 | WP_032611546.1 | YebV family protein | - |
| ES815_RS23405 | 4691851..4692042 | + | 192 | WP_142489952.1 | YebW family protein | - |
| ES815_RS23410 | 4692043..4692684 | - | 642 | WP_142489953.1 | protein-serine/threonine phosphatase | - |
| ES815_RS23415 | 4692863..4693810 | + | 948 | WP_142489954.1 | VirK/YbjX family protein | - |
| - | 4693928..4694135 | + | 208 | - | - | Antitoxin |
| - | 4693967..4694069 | - | 103 | - | - | Toxin |
| ES815_RS23420 | 4694210..4694548 | - | 339 | WP_142489955.1 | YebY family protein | - |
| ES815_RS23425 | 4694563..4695435 | - | 873 | WP_142489956.1 | copper homeostasis membrane protein CopD | - |
| ES815_RS23430 | 4695437..4695811 | - | 375 | WP_142489957.1 | CopC domain-containing protein YobA | - |
| ES815_RS23435 | 4695948..4696178 | + | 231 | WP_142489958.1 | DNA polymerase III subunit theta | - |
| ES815_RS23440 | 4696286..4696945 | + | 660 | WP_142489959.1 | carbon-nitrogen hydrolase family protein | - |
| ES815_RS23445 | 4696970..4697632 | + | 663 | WP_142489960.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T117686 NZ_CP035382:c4694069-4693967 [Leclercia adecarboxylata]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 208 bp
>AT117686 NZ_CP035382:4693928-4694135 [Leclercia adecarboxylata]
AAAGTCCGCAACAGGAAAATGCGTTTACTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAA
ATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGAC
GACGCCAGGTTTTCCAGTCCGCAGCAAAAGTGGCCTGAAAAAAAGCGT
AAAGTCCGCAACAGGAAAATGCGTTTACTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAA
ATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGAC
GACGCCAGGTTTTCCAGTCCGCAGCAAAAGTGGCCTGAAAAAAAGCGT
