Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 783259..783815 Replicon chromosome
Accession NZ_CP035300
Organism Dyella sp. M7H15-1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag EO087_RS03840 Protein ID WP_128897719.1
Coordinates 783519..783815 (+) Length 99 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag EO087_RS03835 Protein ID WP_128897718.1
Coordinates 783259..783531 (+) Length 91 a.a.

Genomic Context

EO087_RS03805EO087_RS03810EO087_RS03815EO087_RS03820EO087_RS03825EO087_RS03830EO087_RS03835EO087_RS03840EO087_RS03850EO087_RS03855EO087_RS03860EO087_RS03845
Location: 779001..779799 (799 bp)
Type: Others
Protein ID: Protein_745
Location: 780051..780473 (423 bp)
Type: Others
Protein ID: WP_128897714.1
Location: 780812..781535 (724 bp)
Type: Others
Protein ID: Protein_747
Location: 781717..782001 (285 bp)
Type: Others
Protein ID: WP_128897715.1
Location: 781998..782360 (363 bp)
Type: Others
Protein ID: WP_128897716.1
Location: 782720..783067 (348 bp)
Type: Others
Protein ID: WP_128897717.1
Location: 783259..783531 (273 bp)
Type: Antitoxin
Protein ID: WP_128897718.1
Location: 783519..783815 (297 bp)
Type: Toxin
Protein ID: WP_128897719.1
Location: 785083..786192 (1110 bp)
Type: Others
Protein ID: WP_128897721.1
Location: 786201..786823 (623 bp)
Type: Others
Protein ID: Protein_755
Location: 787128..788696 (1569 bp)
Type: Others
Protein ID: WP_128897722.1
Location: 784058..784996 (939 bp)
Type: Others
Protein ID: WP_128897720.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
EO087_RS03805779001..779799+799Protein_745ferritin-like domain-containing protein-
EO087_RS03810780051..780473+423WP_128897714.1hypothetical protein-
EO087_RS03815780812..781535+724Protein_747IS5 family transposase-
EO087_RS03820781717..782001+285WP_128897715.1hypothetical protein-
EO087_RS03825781998..782360+363WP_128897716.1transcriptional regulator-
EO087_RS03830782720..783067+348WP_128897717.1hypothetical protein-
EO087_RS03835783259..783531+273WP_128897718.1CopG family ribbon-helix-helix proteinAntitoxin
EO087_RS03840783519..783815+297WP_128897719.1type II toxin-antitoxin system RelE/ParE family toxinToxin
EO087_RS03845784058..784996-939WP_128897720.1DNA-binding protein-
EO087_RS03850785083..786192+1110WP_128897721.1ISAs1 family transposase-
EO087_RS03855786201..786823+623Protein_755site-specific integrase-
EO087_RS03860787128..788696+1569WP_128897722.1IS21 family transposase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-flankIS/Tn--780812..781024212


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-95)

Antitoxin

Ribbon-helix-helix protein, CopG

(3-40)


Sequences

Toxin        


Download         Length: 99 a.a.        Molecular weight: 10833.54 Da        Isoelectric Point: 6.4564

>T117569 WP_128897719.1 NZ_CP035300:783519-783815 [Dyella sp. M7H15-1]
VPRVIVTEGAALGLERCRRFLAAKAPDAAKRAGQAIERQFLLLETAPDIGRPFPEMLELRELVIAFGDSGYVALYCHEPA
ADAVYVLAFRHQKEAGYF

Download         Length: 297 bp

>T117569 NZ_CP035300:783519-783815 [Dyella sp. M7H15-1]
GTGCCACGAGTAATCGTTACGGAAGGCGCTGCACTGGGATTGGAGCGATGCCGGCGCTTCCTTGCCGCCAAGGCCCCGGA
TGCCGCCAAGCGCGCCGGACAGGCGATCGAGCGGCAATTCCTGCTGCTGGAAACGGCCCCCGACATTGGCCGACCGTTCC
CTGAAATGCTGGAGCTGCGCGAGCTGGTGATCGCCTTCGGTGATTCCGGCTACGTGGCCTTGTATTGTCACGAACCGGCT
GCCGATGCCGTCTATGTCTTGGCATTCCGGCACCAGAAAGAGGCGGGCTACTTCTGA

Antitoxin


Download         Length: 91 a.a.        Molecular weight: 10563.81 Da        Isoelectric Point: 6.8724

>AT117569 WP_128897718.1 NZ_CP035300:783259-783531 [Dyella sp. M7H15-1]
MATSLKIDDALKGRVQHLASQRRRSPHWIMLEAIQQYVEREEARESFKREALASWAAYRETGRHLTGQEVRAWLNTWGTE
DEKSVPECHE

Download         Length: 273 bp

>AT117569 NZ_CP035300:783259-783531 [Dyella sp. M7H15-1]
ATGGCAACATCGCTCAAGATTGACGATGCGCTGAAAGGCCGCGTCCAACACCTCGCCAGTCAGCGCCGCCGCTCGCCGCA
CTGGATCATGCTCGAAGCCATCCAGCAATACGTCGAGCGGGAAGAAGCACGCGAGAGCTTTAAGCGGGAAGCCTTGGCTT
CCTGGGCGGCCTATCGGGAAACCGGACGGCACCTGACCGGCCAGGAAGTGCGCGCCTGGTTGAACACCTGGGGCACCGAA
GACGAAAAGTCGGTGCCTGAGTGCCACGAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References