Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 223456..224045 Replicon chromosome
Accession NZ_CP035300
Organism Dyella sp. M7H15-1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag EO087_RS01195 Protein ID WP_128897271.1
Coordinates 223456..223800 (-) Length 115 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag EO087_RS01200 Protein ID WP_128897272.1
Coordinates 223788..224045 (-) Length 86 a.a.

Genomic Context

EO087_RS01205EO087_RS01185EO087_RS01190EO087_RS01195EO087_RS01200EO087_RS01210EO087_RS01215EO087_RS01220
Location: 224098..224457 (360 bp)
Type: Others
Protein ID: WP_205744407.1
Location: 220768..221703 (936 bp)
Type: Others
Protein ID: WP_128897269.1
Location: 221799..223400 (1602 bp)
Type: Others
Protein ID: WP_128897270.1
Location: 223456..223800 (345 bp)
Type: Toxin
Protein ID: WP_128897271.1
Location: 223788..224045 (258 bp)
Type: Antitoxin
Protein ID: WP_128897272.1
Location: 224606..225238 (633 bp)
Type: Others
Protein ID: WP_205744408.1
Location: 225354..227519 (2166 bp)
Type: Others
Protein ID: WP_128897273.1
Location: 227666..228601 (936 bp)
Type: Others
Protein ID: WP_128897274.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
EO087_RS01185220768..221703-936WP_128897269.1CPBP family intramembrane metalloprotease-
EO087_RS01190221799..223400-1602WP_128897270.1peptide chain release factor 3-
EO087_RS01195223456..223800-345WP_128897271.1type II toxin-antitoxin system RelE/ParE family toxinToxin
EO087_RS01200223788..224045-258WP_128897272.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
EO087_RS01205224098..224457+360WP_205744407.1DUF3828 domain-containing protein-
EO087_RS01210224606..225238-633WP_205744408.1hypothetical protein-
EO087_RS01215225354..227519-2166WP_128897273.1elongation factor G-
EO087_RS01220227666..228601-936WP_128897274.1carbohydrate kinase family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 115 a.a.        Molecular weight: 13065.08 Da        Isoelectric Point: 9.8167

>T117565 WP_128897271.1 NZ_CP035300:c223800-223456 [Dyella sp. M7H15-1]
MAEVIWTDPALSKLEEIADYIALENPLAANELVQRVFAHIGQLADHPESGSKPQELKGWRYRQIIEPPCRIFYRIDGDQV
FILYVMRSKKRLLSNKLDRRSSATPTRKIGRGAT

Download         Length: 345 bp

>T117565 NZ_CP035300:c223800-223456 [Dyella sp. M7H15-1]
ATGGCTGAAGTGATTTGGACCGATCCGGCGCTCAGTAAGCTGGAAGAAATCGCCGATTACATCGCGCTCGAAAATCCCCT
CGCGGCAAACGAGCTCGTTCAACGCGTTTTCGCACACATAGGGCAGCTTGCTGACCATCCTGAGAGCGGCTCCAAGCCGC
AGGAGCTGAAGGGATGGCGTTATCGGCAAATCATCGAGCCACCATGCAGAATCTTCTACCGTATCGACGGGGATCAAGTT
TTCATCCTCTATGTCATGCGCAGCAAAAAGCGGCTTCTTTCCAATAAGCTGGACAGGCGAAGCTCAGCGACACCCACCCG
AAAAATCGGGCGAGGGGCAACCTGA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9965.58 Da        Isoelectric Point: 10.1439

>AT117565 WP_128897272.1 NZ_CP035300:c224045-223788 [Dyella sp. M7H15-1]
MRTELVTTLKRQATELLADLERHREPILITQHGLPSAYLVDVVSYEAMQRRMKLLEGIARGERAVEEGRTLTHEQAKERL
KRWLK

Download         Length: 258 bp

>AT117565 NZ_CP035300:c224045-223788 [Dyella sp. M7H15-1]
ATGCGCACCGAATTGGTCACCACCCTCAAACGCCAGGCCACTGAACTGTTGGCTGACCTGGAGCGCCACCGCGAGCCAAT
CCTGATAACCCAGCATGGCTTGCCTAGCGCTTATCTTGTCGATGTTGTGTCTTACGAAGCCATGCAGCGGCGCATGAAGC
TGCTGGAAGGCATTGCGCGCGGTGAACGTGCGGTGGAAGAAGGCCGCACCTTGACGCATGAACAGGCAAAGGAACGCCTC
AAACGATGGCTGAAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References