Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2229823..2229966 | Replicon | chromosome |
| Accession | NZ_CP035276 | ||
| Organism | Citrobacter freundii strain R17 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2229858..2229961 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2229823..2229966 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EQ249_RS11065 | 2224974..2225876 | - | 903 | WP_003844140.1 | diguanylate cyclase | - |
| EQ249_RS11075 | 2226196..2226387 | - | 192 | WP_008322661.1 | hypothetical protein | - |
| EQ249_RS11080 | 2226880..2227467 | - | 588 | WP_106107223.1 | hypothetical protein | - |
| EQ249_RS11090 | 2228093..2228467 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| EQ249_RS11095 | 2228471..2229343 | + | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| EQ249_RS11100 | 2229364..2229702 | + | 339 | WP_003034934.1 | YebY family protein | - |
| - | 2229823..2229966 | - | 144 | - | - | Antitoxin |
| - | 2229858..2229961 | + | 104 | - | - | Toxin |
| EQ249_RS11105 | 2230115..2230756 | + | 642 | WP_106107224.1 | protein-serine/threonine phosphatase | - |
| EQ249_RS11110 | 2230757..2230948 | - | 192 | WP_003034941.1 | YebW family protein | - |
| EQ249_RS11115 | 2231051..2231287 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| EQ249_RS11120 | 2231388..2232776 | - | 1389 | WP_200004130.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T117521 NZ_CP035276:2229858-2229961 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT117521 NZ_CP035276:c2229966-2229823 [Citrobacter freundii]
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
