Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RelE(toxin) |
Location | 1147568..1148066 | Replicon | chromosome |
Accession | NZ_CP035244 | ||
Organism | Streptococcus pneumoniae strain TVO_1901945 |
Toxin (Protein)
Gene name | relE | Uniprot ID | C1CEI0 |
Locus tag | EQH36_RS05745 | Protein ID | WP_001823540.1 |
Coordinates | 1147568..1147822 (-) | Length | 85 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | B1IC20 |
Locus tag | EQH36_RS05750 | Protein ID | WP_000208080.1 |
Coordinates | 1147824..1148066 (-) | Length | 81 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
EQH36_RS05730 (EQH36_06035) | 1142829..1145297 | - | 2469 | WP_001152992.1 | DNA gyrase subunit A | - |
EQH36_RS05735 (EQH36_06040) | 1145491..1146477 | + | 987 | WP_000204727.1 | L-lactate dehydrogenase | - |
EQH36_RS05740 (EQH36_06045) | 1146826..1147521 | - | 696 | WP_000731163.1 | potassium channel family protein | - |
EQH36_RS05745 (EQH36_06050) | 1147568..1147822 | - | 255 | WP_001823540.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
EQH36_RS05750 (EQH36_06055) | 1147824..1148066 | - | 243 | WP_000208080.1 | DUF6290 family protein | Antitoxin |
EQH36_RS05755 (EQH36_06060) | 1148157..1148966 | - | 810 | WP_001289493.1 | MBL fold metallo-hydrolase | - |
EQH36_RS05760 (EQH36_06065) | 1148968..1150317 | - | 1350 | WP_000886210.1 | cell wall metabolism sensor histidine kinase VicK | - |
EQH36_RS05765 (EQH36_06070) | 1150310..1151014 | - | 705 | WP_000722076.1 | response regulator YycF | - |
EQH36_RS05770 (EQH36_06075) | 1151069..1152244 | - | 1176 | WP_000886145.1 | A/G-specific adenine glycosylase | - |
EQH36_RS10850 | 1152341..1152466 | + | 126 | WP_001818232.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 10040.76 Da Isoelectric Point: 10.9371
>T117456 WP_001823540.1 NZ_CP035244:c1147822-1147568 [Streptococcus pneumoniae]
MYKLVPTRRFIKQLKKLDRYTQKLITNYLQTNVLEGPRRHGKALVGNRVGQWRYRIGNYRVIVQIVDDELVVATLEVGHR
RDIY
MYKLVPTRRFIKQLKKLDRYTQKLITNYLQTNVLEGPRRHGKALVGNRVGQWRYRIGNYRVIVQIVDDELVVATLEVGHR
RDIY
Download Length: 255 bp
>T117456 NZ_CP035244:c1147822-1147568 [Streptococcus pneumoniae]
TTGTATAAATTAGTTCCAACAAGACGTTTTATCAAGCAATTGAAAAAATTGGACCGTTATACGCAGAAGCTAATTACAAA
CTATTTACAAACCAATGTTTTGGAAGGTCCAAGACGACACGGAAAGGCTTTGGTTGGTAATCGCGTTGGTCAATGGCGCT
ATAGAATTGGTAATTATCGAGTTATCGTACAAATTGTAGATGATGAATTAGTCGTTGCTACTCTAGAAGTTGGTCATCGG
AGAGATATTTATTGA
TTGTATAAATTAGTTCCAACAAGACGTTTTATCAAGCAATTGAAAAAATTGGACCGTTATACGCAGAAGCTAATTACAAA
CTATTTACAAACCAATGTTTTGGAAGGTCCAAGACGACACGGAAAGGCTTTGGTTGGTAATCGCGTTGGTCAATGGCGCT
ATAGAATTGGTAATTATCGAGTTATCGTACAAATTGTAGATGATGAATTAGTCGTTGCTACTCTAGAAGTTGGTCATCGG
AGAGATATTTATTGA
Antitoxin
Download Length: 81 a.a. Molecular weight: 9205.46 Da Isoelectric Point: 4.0527
>AT117456 WP_000208080.1 NZ_CP035244:c1148066-1147824 [Streptococcus pneumoniae]
MTTITLKVSEADKTFMKAMAKFEGVSLSELIRTKTLEALEDEYDARVADLAYQEYLEDLEKGVEPITWEEMMHDLGLKDE
MTTITLKVSEADKTFMKAMAKFEGVSLSELIRTKTLEALEDEYDARVADLAYQEYLEDLEKGVEPITWEEMMHDLGLKDE
Download Length: 243 bp
>AT117456 NZ_CP035244:c1148066-1147824 [Streptococcus pneumoniae]
ATGACTACTATTACATTAAAAGTTTCTGAAGCTGATAAAACATTTATGAAAGCAATGGCTAAGTTTGAAGGAGTTTCCCT
TTCGGAACTTATTCGCACCAAAACTCTTGAAGCCCTAGAAGATGAATACGATGCTCGTGTGGCAGATTTAGCCTATCAAG
AGTATTTAGAAGACTTGGAAAAAGGAGTTGAACCCATTACTTGGGAAGAAATGATGCATGATTTAGGCTTGAAGGATGAA
TAA
ATGACTACTATTACATTAAAAGTTTCTGAAGCTGATAAAACATTTATGAAAGCAATGGCTAAGTTTGAAGGAGTTTCCCT
TTCGGAACTTATTCGCACCAAAACTCTTGAAGCCCTAGAAGATGAATACGATGCTCGTGTGGCAGATTTAGCCTATCAAG
AGTATTTAGAAGACTTGGAAAAAGGAGTTGAACCCATTACTTGGGAAGAAATGATGCATGATTTAGGCTTGAAGGATGAA
TAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | C1CEI0 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A064C2J7 |