Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 675538..675683 | Replicon | chromosome |
| Accession | NZ_CP035210 | ||
| Organism | Klebsiella pneumoniae strain TH164 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 675574..675676 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 675538..675683 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EQH51_RS03235 | 670668..672728 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| EQH51_RS03240 | 672732..673391 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| EQH51_RS03245 | 673470..673700 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| EQH51_RS03250 | 673813..674187 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| EQH51_RS03255 | 674191..675060 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| EQH51_RS03260 | 675077..675415 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 675538..675683 | - | 146 | - | - | Antitoxin |
| - | 675574..675676 | + | 103 | - | - | Toxin |
| EQH51_RS03270 | 676051..676194 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| EQH51_RS03275 | 676299..677267 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| EQH51_RS03280 | 677424..678077 | + | 654 | WP_032432437.1 | protein-serine/threonine phosphatase | - |
| EQH51_RS03285 | 678074..678265 | - | 192 | WP_002911395.1 | YebW family protein | - |
| EQH51_RS03290 | 678363..678602 | - | 240 | WP_002911393.1 | YebV family protein | - |
| EQH51_RS03295 | 678718..680151 | - | 1434 | WP_021440382.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T117384 NZ_CP035210:675574-675676 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT117384 NZ_CP035210:c675683-675538 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
