Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4577160..4577305 | Replicon | chromosome |
| Accession | NZ_CP035202 | ||
| Organism | Klebsiella pneumoniae strain LH94 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4577167..4577269 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4577160..4577305 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EQH49_RS22405 | 4572691..4574124 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EQH49_RS22410 | 4574240..4574479 | + | 240 | WP_002911393.1 | YebV family protein | - |
| EQH49_RS22415 | 4574577..4574768 | + | 192 | WP_002911395.1 | YebW family protein | - |
| EQH49_RS22420 | 4574765..4575418 | - | 654 | WP_064145335.1 | protein-serine/threonine phosphatase | - |
| EQH49_RS22425 | 4575575..4576543 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| EQH49_RS22430 | 4576648..4576791 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4577160..4577305 | + | 146 | - | - | Antitoxin |
| - | 4577167..4577269 | - | 103 | - | - | Toxin |
| EQH49_RS22440 | 4577428..4577766 | - | 339 | WP_002911404.1 | YebY family protein | - |
| EQH49_RS22445 | 4577783..4578652 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| EQH49_RS22450 | 4578656..4579030 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| EQH49_RS22455 | 4579143..4579373 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| EQH49_RS22460 | 4579452..4580111 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| EQH49_RS22465 | 4580115..4582175 | - | 2061 | WP_064145333.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T117358 NZ_CP035202:c4577269-4577167 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT117358 NZ_CP035202:4577160-4577305 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
