Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 820832..820977 | Replicon | chromosome |
| Accession | NZ_CP035194 | ||
| Organism | Klebsiella pneumoniae strain LH102-A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 820839..820941 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 820832..820977 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EPO92_RS04140 | 816364..817797 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EPO92_RS04145 | 817913..818152 | + | 240 | WP_002911393.1 | YebV family protein | - |
| EPO92_RS04150 | 818250..818441 | + | 192 | WP_002911395.1 | YebW family protein | - |
| EPO92_RS04155 | 818438..819091 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| EPO92_RS04160 | 819248..820216 | + | 969 | WP_074426446.1 | VirK/YbjX family protein | - |
| EPO92_RS04165 | 820321..820464 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 820832..820977 | + | 146 | - | - | Antitoxin |
| - | 820839..820941 | - | 103 | - | - | Toxin |
| EPO92_RS04175 | 821100..821438 | - | 339 | WP_016529031.1 | YebY family protein | - |
| EPO92_RS04180 | 821455..822324 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| EPO92_RS04185 | 822328..822702 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| EPO92_RS04190 | 822815..823045 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| EPO92_RS04195 | 823124..823783 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| EPO92_RS04200 | 823787..825847 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T117311 NZ_CP035194:c820941-820839 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT117311 NZ_CP035194:820832-820977 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
