Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1951856..1952022 | Replicon | chromosome |
| Accession | NZ_CP035129 | ||
| Organism | Kosakonia cowanii strain FBS 223 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1951916..1952018 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1951856..1952022 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EQG67_RS09280 | 1947065..1949119 | + | 2055 | WP_128482740.1 | oligopeptidase B | - |
| EQG67_RS09285 | 1949120..1949782 | - | 663 | WP_128482741.1 | exodeoxyribonuclease X | - |
| EQG67_RS09290 | 1949794..1950024 | - | 231 | WP_034813210.1 | DNA polymerase III subunit theta | - |
| EQG67_RS09295 | 1950161..1950535 | + | 375 | WP_054803279.1 | CopC domain-containing protein YobA | - |
| EQG67_RS09300 | 1950537..1951406 | + | 870 | WP_128482742.1 | copper homeostasis membrane protein CopD | - |
| EQG67_RS09305 | 1951425..1951769 | + | 345 | WP_128482743.1 | YebY family protein | - |
| - | 1951856..1952022 | - | 167 | - | - | Antitoxin |
| - | 1951916..1952018 | + | 103 | - | - | Toxin |
| EQG67_RS09310 | 1952265..1952909 | + | 645 | WP_128482744.1 | protein-serine/threonine phosphatase | - |
| EQG67_RS09315 | 1952910..1953101 | - | 192 | WP_023480173.1 | YebW family protein | - |
| EQG67_RS09320 | 1953207..1953446 | - | 240 | WP_023480127.1 | YebV family protein | - |
| EQG67_RS09325 | 1953561..1955000 | - | 1440 | WP_206616716.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T117238 NZ_CP035129:1951916-1952018 [Kosakonia cowanii]
GCAAGGCGACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
GCAAGGCGACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 167 bp
>AT117238 NZ_CP035129:c1952022-1951856 [Kosakonia cowanii]
AGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTTAGTCGCCTTGCACCTTAAGAATAGATGACGACACCAGCTTTTCCAGTCCGCGACAAATGTGGTC
AGAAAAA
AGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTTAGTCGCCTTGCACCTTAAGAATAGATGACGACACCAGCTTTTCCAGTCCGCGACAAATGTGGTC
AGAAAAA
