Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2088454..2088725 | Replicon | chromosome |
| Accession | NZ_CP035123 | ||
| Organism | Escherichia coli strain EC25 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2088584..2088687 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2088454..2088725 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EQK40_RS10215 | 2085009..2085671 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EQK40_RS10220 | 2085695..2086351 | - | 657 | WP_128426886.1 | carbon-nitrogen hydrolase family protein | - |
| EQK40_RS10225 | 2086453..2086683 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EQK40_RS10230 | 2086822..2087196 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| EQK40_RS10235 | 2087200..2088072 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| EQK40_RS10240 | 2088085..2088426 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2088454..2088725 | - | 272 | - | - | Antitoxin |
| - | 2088584..2088687 | + | 104 | - | - | Toxin |
| EQK40_RS10245 | 2088822..2089478 | + | 657 | WP_128426888.1 | protein-serine/threonine phosphatase | - |
| EQK40_RS10250 | 2089479..2089670 | - | 192 | WP_001296140.1 | YebW family protein | - |
| EQK40_RS10255 | 2089775..2090011 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EQK40_RS10260 | 2090129..2091568 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T117218 NZ_CP035123:2088584-2088687 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT117218 NZ_CP035123:c2088725-2088454 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
