Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2212709..2212806 Replicon chromosome
Accession NZ_CP035034
Organism Pantoea ananatis strain NN08200

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2212709..2212806 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2212709..2212806 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EPK90_RS10605 2207857..2209929 + 2073 WP_128392063.1 prolyl oligopeptidase family serine peptidase -
EPK90_RS10610 2209913..2210584 - 672 WP_186306718.1 exodeoxyribonuclease X -
EPK90_RS10615 2210584..2210814 - 231 WP_019105100.1 DNA polymerase III subunit theta -
EPK90_RS10620 2210965..2211339 + 375 WP_110286801.1 copper homeostasis periplasmic binding protein CopC -
EPK90_RS10625 2211344..2212219 + 876 WP_110286800.1 copper homeostasis membrane protein CopD -
EPK90_RS10630 2212247..2212594 + 348 WP_014593872.1 YebY family protein -
- 2212709..2212806 + 98 - - Toxin
EPK90_RS10635 2212947..2214491 - 1545 WP_128392064.1 MCP four helix bundle domain-containing protein -
EPK90_RS10640 2214982..2215686 - 705 WP_072138814.1 GntR family transcriptional regulator -
EPK90_RS10645 2215966..2217588 + 1623 WP_128392065.1 alpha-glucoside-specific PTS transporter subunit IIBC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 98 bp

>T117141 NZ_CP035034:2212709-2212806 [Pantoea ananatis]
GCAAGGCGAAAGCCTCTATTAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT

Antitoxin


Download         Length: 98 bp

>AT117141 NZ_CP035034:c2212806-2212709 [Pantoea ananatis]
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTAA
TAGAGGCTTTCGCCTTGC

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References