117110

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) BrnTA/BrnT-BrnA
Location 3798938..3799449 Replicon chromosome
Accession NZ_CP034998
Organism Rhizobium acidisoli strain FH23

Toxin (Protein)


Gene name brnT Uniprot ID -
Locus tag CO657_RS18545 Protein ID WP_054182469.1
Coordinates 3798938..3799135 (+) Length 66 a.a.

Antitoxin (Protein)


Gene name brnA Uniprot ID -
Locus tag CO657_RS18550 Protein ID WP_054182468.1
Coordinates 3799132..3799449 (+) Length 106 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CO657_RS18520 3794743..3794967 + 225 WP_003589912.1 sulfurtransferase TusA family protein -
CO657_RS18525 3794964..3796154 - 1191 WP_054182471.1 GTP-binding protein -
CO657_RS18530 3796179..3797312 - 1134 WP_003589909.1 D-alanyl-D-alanine carboxypeptidase -
CO657_RS18535 3797500..3798663 + 1164 WP_054182470.1 amidohydrolase -
CO657_RS18545 3798938..3799135 + 198 WP_054182469.1 hypothetical protein Toxin
CO657_RS18550 3799132..3799449 + 318 WP_054182468.1 BrnA antitoxin family protein Antitoxin
CO657_RS18555 3799524..3800042 - 519 WP_054182467.1 DUF2937 family protein -
CO657_RS18560 3800207..3800467 + 261 WP_003589897.1 hypothetical protein -
CO657_RS36805 3800574..3800726 + 153 WP_003589895.1 hypothetical protein -
CO657_RS18565 3800760..3801050 - 291 WP_012559159.1 BON domain-containing protein -
CO657_RS18570 3801114..3801764 - 651 WP_054182527.1 hypothetical protein -
CO657_RS18575 3802126..3803316 + 1191 WP_054182526.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
CO657_RS18580 3803320..3804405 - 1086 WP_054182466.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

BrnA antitoxin of type II toxin-antitoxin system

(27-103)


Sequences

Toxin        


Download         Length: 66 a.a.        Molecular weight: 7422.57 Da        Isoelectric Point: 7.0127

>T117110 WP_054182469.1 NZ_CP034998:3798938-3799135 [Rhizobium acidisoli]
MEIVWDEPKRIANIEKHGLDFADLTFEFFLSSVVVPAKDGRSKGSEALSIISMRPARKDERSMIR

Download         Length: 198 bp

>T117110 NZ_CP034998:3798938-3799135 [Rhizobium acidisoli]
ATGGAGATCGTGTGGGACGAACCGAAGCGGATTGCCAATATCGAGAAACATGGCCTCGATTTCGCCGATCTGACTTTCGA
GTTCTTCCTGTCTTCCGTTGTCGTTCCCGCCAAAGATGGGCGATCCAAGGGCTCTGAGGCGCTTTCGATCATTTCGATGC
GGCCCGCCCGCAAGGACGAAAGGAGTATGATCCGATGA

Antitoxin


Download         Length: 106 a.a.        Molecular weight: 11833.59 Da        Isoelectric Point: 10.4275

>AT117110 WP_054182468.1 NZ_CP034998:3799132-3799449 [Rhizobium acidisoli]
MIIKARKTTQFQPGRGYSKEDWDAVSDNPPLSKEEMASAKPFKEAFPEVAEKMERAIAARGRPKLDNPKQPLNIRLDADI
IQFYKATGKGWQSRMNDALRKAAGL

Download         Length: 318 bp

>AT117110 NZ_CP034998:3799132-3799449 [Rhizobium acidisoli]
ATGATTATCAAAGCCCGGAAAACAACCCAGTTTCAGCCTGGCCGCGGCTACTCCAAGGAGGATTGGGATGCCGTCTCCGA
CAATCCCCCTCTGTCCAAGGAAGAAATGGCAAGCGCCAAGCCCTTCAAGGAGGCATTTCCTGAGGTCGCTGAAAAGATGG
AGAGGGCCATTGCAGCCCGCGGTCGACCCAAGCTTGATAACCCGAAGCAACCTCTGAACATCCGTCTCGATGCCGATATC
ATCCAGTTCTACAAGGCCACTGGCAAAGGCTGGCAGTCAAGGATGAACGATGCATTGCGAAAGGCGGCCGGCTTATAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References