Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-dinJ/YafQ-RelB
Location 640893..641499 Replicon chromosome
Accession NZ_CP034998
Organism Rhizobium acidisoli strain FH23

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag CO657_RS03095 Protein ID WP_082366229.1
Coordinates 640893..641228 (-) Length 112 a.a.

Antitoxin (Protein)


Gene name dinJ Uniprot ID -
Locus tag CO657_RS03100 Protein ID WP_054181489.1
Coordinates 641218..641499 (-) Length 94 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CO657_RS03085 636382..637479 - 1098 WP_054181486.1 chorismate synthase -
CO657_RS03090 637632..640805 - 3174 WP_054181487.1 EAL domain-containing protein -
CO657_RS03095 640893..641228 - 336 WP_082366229.1 type II toxin-antitoxin system YafQ family toxin Toxin
CO657_RS03100 641218..641499 - 282 WP_054181489.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
CO657_RS03105 641833..642093 + 261 WP_003569889.1 DUF1344 domain-containing protein -
CO657_RS03110 642221..642463 + 243 WP_012556801.1 DUF1902 domain-containing protein -
CO657_RS03120 642677..643267 - 591 WP_054181490.1 phosphoglycerate mutase family protein -
CO657_RS03125 643289..644107 - 819 WP_003588115.1 enoyl-ACP reductase FabI -
CO657_RS03130 644230..645435 - 1206 WP_054181491.1 J domain-containing protein -
CO657_RS03135 645731..646189 - 459 WP_003588112.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(21-111)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-87)


Sequences

Toxin        


Download         Length: 112 a.a.        Molecular weight: 12585.28 Da        Isoelectric Point: 8.0999

>T117108 WP_082366229.1 NZ_CP034998:c641228-640893 [Rhizobium acidisoli]
MPSDKKQAKSASSKRASLPRQSSHTRQLQKDWERLSRSGRYDMVALKRVIGLIVDNDGPLPAELKDHELTGDWKDHRECH
IGGDFLLIYTVDEKKNLVVFVAAGTHAELFE

Download         Length: 336 bp

>T117108 NZ_CP034998:c641228-640893 [Rhizobium acidisoli]
TTGCCAAGTGACAAGAAACAAGCGAAGTCCGCCTCCAGCAAGCGGGCTTCGCTGCCGCGGCAATCAAGCCATACCAGGCA
ACTCCAAAAAGATTGGGAGCGTCTTTCGAGGTCTGGCCGATATGACATGGTCGCACTGAAGAGAGTCATCGGCTTGATCG
TCGATAACGATGGTCCTCTACCGGCCGAACTTAAGGACCACGAGCTGACGGGTGACTGGAAAGATCATCGAGAATGTCAT
ATCGGCGGGGATTTTCTCCTTATCTACACGGTAGATGAAAAAAAGAATCTGGTTGTGTTCGTGGCTGCCGGTACACATGC
CGAACTCTTTGAATGA

Antitoxin


Download         Length: 94 a.a.        Molecular weight: 10132.63 Da        Isoelectric Point: 7.0159

>AT117108 WP_054181489.1 NZ_CP034998:c641499-641218 [Rhizobium acidisoli]
MAANAYVRARIDPSVKDGAALVLDSLGLTTSDIIRIVLTRIARDKALPVELTRPNAETIAAMEEARAIKAGRGEHFNSAE
ELFESLERNKIAK

Download         Length: 282 bp

>AT117108 NZ_CP034998:c641499-641218 [Rhizobium acidisoli]
ATGGCTGCAAACGCATATGTGCGCGCCCGCATTGACCCTTCGGTGAAGGATGGCGCCGCGTTGGTACTCGACAGTCTCGG
TTTGACGACCTCGGATATCATCCGCATCGTTTTAACCAGGATTGCCCGGGATAAAGCTCTTCCGGTGGAGTTGACTCGCC
CGAACGCCGAAACAATCGCTGCGATGGAGGAAGCAAGAGCCATCAAGGCGGGTCGCGGCGAGCATTTTAATAGTGCTGAA
GAGCTGTTCGAGTCACTTGAGAGAAACAAGATTGCCAAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References