Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1989023..1989294 | Replicon | chromosome |
| Accession | NZ_CP034966 | ||
| Organism | Escherichia coli strain WCHEC020032 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1989153..1989256 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1989023..1989294 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7V17_RS11490 | 1985578..1986240 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C7V17_RS11495 | 1986264..1986920 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C7V17_RS11500 | 1987022..1987252 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C7V17_RS11505 | 1987391..1987765 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C7V17_RS11510 | 1987769..1988641 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C7V17_RS11515 | 1988654..1988995 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1989023..1989294 | - | 272 | - | - | Antitoxin |
| - | 1989153..1989256 | + | 104 | - | - | Toxin |
| C7V17_RS11520 | 1989391..1990047 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| C7V17_RS11525 | 1990048..1990239 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C7V17_RS11530 | 1990344..1990580 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C7V17_RS11535 | 1990698..1992137 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T117093 NZ_CP034966:1989153-1989256 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT117093 NZ_CP034966:c1989294-1989023 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
