116994

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) stbDE/ParE-DnaT
Location 380198..380729 Replicon chromosome
Accession NZ_CP034938
Organism Pectobacterium odoriferum strain JK2.1

Toxin (Protein)


Gene name stbE Uniprot ID -
Locus tag EO763_RS01700 Protein ID WP_161527875.1
Coordinates 380442..380729 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name stbD Uniprot ID -
Locus tag EO763_RS01695 Protein ID WP_161527874.1
Coordinates 380198..380452 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EO763_RS01670 375676..376266 - 591 WP_161527872.1 DnaA initiator-associating protein DiaA -
EO763_RS01675 376308..376703 - 396 WP_161530319.1 YraN family protein -
EO763_RS01680 376661..378679 - 2019 WP_161527873.1 penicillin-binding protein activator -
EO763_RS01685 378741..379628 + 888 WP_039493033.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
EO763_RS01695 380198..380452 + 255 WP_161527874.1 plasmid stabilization protein Antitoxin
EO763_RS01700 380442..380729 + 288 WP_161527875.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
EO763_RS01705 380906..381691 + 786 WP_161527876.1 4,5-DOPA dioxygenase extradiol -
EO763_RS01710 381878..383038 - 1161 WP_161527877.1 glutathionylspermidine synthase family protein -
EO763_RS01715 383050..383724 - 675 WP_010297420.1 DUF1190 family protein -
EO763_RS01720 383989..385380 - 1392 WP_161527878.1 outer membrane channel protein TolC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-82)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11013.92 Da        Isoelectric Point: 10.7131

>T116994 WP_161527875.1 NZ_CP034938:380442-380729 [Pectobacterium odoriferum]
MTYKLKFVPSALKEWEKLGRPVREQFKKKLVERLENPRVPSAQLHGRKDQYKIKLKSAGYRLVYLVQDETITVMVMGVGK
REGSQIYSDTKGRSA

Download         Length: 288 bp

>T116994 NZ_CP034938:380442-380729 [Pectobacterium odoriferum]
ATGACCTATAAGTTAAAATTTGTGCCTTCTGCATTGAAGGAATGGGAAAAATTAGGGCGCCCTGTCCGAGAGCAGTTCAA
GAAAAAGCTGGTTGAGCGTTTGGAAAATCCTCGTGTTCCTTCAGCCCAACTTCATGGCCGTAAAGACCAGTATAAAATTA
AACTGAAGTCCGCTGGCTACAGGCTGGTGTATTTGGTCCAGGATGAGACCATTACTGTGATGGTTATGGGCGTTGGAAAG
CGCGAAGGTAGCCAGATTTATTCTGATACTAAAGGTCGTTCTGCTTAA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9220.39 Da        Isoelectric Point: 3.7947

>AT116994 WP_161527874.1 NZ_CP034938:380198-380452 [Pectobacterium odoriferum]
MAFNILTNTAASITELKRDPMGTVRAAEGETIAILNRNEPVFYCVPPAVFAYLMELAEDAELGRTVDDRMSELADAEEIS
PDDL

Download         Length: 255 bp

>AT116994 NZ_CP034938:380198-380452 [Pectobacterium odoriferum]
ATGGCTTTTAATATCCTAACTAACACCGCTGCCAGCATCACTGAGTTGAAACGTGACCCAATGGGTACAGTACGGGCTGC
TGAAGGTGAAACTATCGCTATACTGAACCGGAATGAGCCGGTGTTCTACTGTGTGCCTCCTGCCGTATTCGCTTATTTAA
TGGAACTGGCTGAAGATGCCGAACTGGGGCGTACCGTTGATGACCGGATGTCAGAACTAGCTGACGCGGAAGAGATTTCG
CCCGATGACCTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References