Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4447563..4447834 | Replicon | chromosome |
| Accession | NZ_CP034808 | ||
| Organism | Escherichia coli strain 08-3914 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4447693..4447796 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4447563..4447834 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AYP36_RS22240 | 4444118..4444780 | - | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
| AYP36_RS22245 | 4444804..4445460 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| AYP36_RS22250 | 4445562..4445792 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AYP36_RS22255 | 4445931..4446305 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| AYP36_RS22260 | 4446309..4447181 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| AYP36_RS22265 | 4447194..4447535 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 4447563..4447834 | - | 272 | - | - | Antitoxin |
| - | 4447693..4447796 | + | 104 | - | - | Toxin |
| AYP36_RS22270 | 4447931..4448587 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| AYP36_RS22275 | 4448588..4448779 | - | 192 | WP_001296140.1 | YebW family protein | - |
| AYP36_RS22280 | 4448884..4449120 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AYP36_RS22285 | 4449238..4450677 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4407539..4463675 | 56136 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T116849 NZ_CP034808:4447693-4447796 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT116849 NZ_CP034808:c4447834-4447563 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
