Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1385550..1385821 | Replicon | chromosome |
| Accession | NZ_CP034806 | ||
| Organism | Escherichia coli strain 2010C-3347 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1385680..1385783 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1385550..1385821 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A1D75_RS06755 | 1382105..1382767 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| A1D75_RS06760 | 1382791..1383447 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| A1D75_RS06765 | 1383549..1383779 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A1D75_RS06770 | 1383918..1384292 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| A1D75_RS06775 | 1384296..1385168 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| A1D75_RS06780 | 1385181..1385522 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 1385550..1385821 | - | 272 | - | - | Antitoxin |
| - | 1385680..1385783 | + | 104 | - | - | Toxin |
| A1D75_RS06785 | 1385918..1386574 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| A1D75_RS06790 | 1386575..1386766 | - | 192 | WP_001296140.1 | YebW family protein | - |
| A1D75_RS06795 | 1386871..1387107 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| A1D75_RS06800 | 1387225..1388664 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T116799 NZ_CP034806:1385680-1385783 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT116799 NZ_CP034806:c1385821-1385550 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
