Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) paaR-paaA-parE/-
Location 165654..166132 Replicon chromosome
Accession NZ_CP034801
Organism Escherichia coli strain 2010C-3142

Toxin (Protein)


Gene name parE_1 Uniprot ID A0A891SFN9
Locus tag AYR10_RS00915 Protein ID WP_001303876.1
Coordinates 165845..166132 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name paaA Uniprot ID Q8XD67
Locus tag AYR10_RS00910 Protein ID WP_000536233.1
Coordinates 165654..165845 (+) Length 64 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AYR10_RS00875 161058..161828 - 771 WP_000450992.1 DUF1627 domain-containing protein -
AYR10_RS00880 161850..162596 - 747 WP_000788745.1 ATP-binding protein -
AYR10_RS00885 162603..163694 - 1092 WP_001205823.1 hypothetical protein -
AYR10_RS00890 163773..164228 + 456 WP_000273724.1 hypothetical protein -
AYR10_RS00895 164435..164860 - 426 WP_000693855.1 Rha family transcriptional regulator -
AYR10_RS00900 164844..165116 - 273 WP_000887453.1 helix-turn-helix domain-containing protein -
AYR10_RS00905 165225..165626 + 402 WP_000986592.1 helix-turn-helix domain-containing protein -
AYR10_RS00910 165654..165845 + 192 WP_000536233.1 hypothetical protein Antitoxin
AYR10_RS00915 165845..166132 + 288 WP_001303876.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
AYR10_RS00925 166410..166565 + 156 WP_000379575.1 DUF1391 family protein -
AYR10_RS00930 166707..167096 + 390 WP_000394511.1 hypothetical protein -
AYR10_RS00935 167283..167468 - 186 WP_001133046.1 hypothetical protein -
AYR10_RS00945 168042..168230 + 189 WP_000413705.1 cell division inhibition protein DicB -
AYR10_RS00950 168227..168418 + 192 WP_001098307.1 DUF1482 family protein -
AYR10_RS00955 168512..170983 + 2472 WP_000034474.1 exonuclease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-91)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 10978.84 Da        Isoelectric Point: 10.1360

>T116720 WP_001303876.1 NZ_CP034801:165845-166132 [Escherichia coli]
MLPILWLPSARDDLRQIITYIAKENPPAARRLKIRIETSVLPLSEHPYLYPPSERVSGLREIVTHPNYIILYRVAASSIE
IVSVTHSRRQFPFSI

Download         Length: 288 bp

>T116720 NZ_CP034801:165845-166132 [Escherichia coli]
ATGTTACCCATTTTATGGCTACCGTCTGCTCGCGATGATTTGCGCCAGATCATAACTTACATCGCCAAGGAGAACCCACC
GGCAGCACGTAGACTAAAAATACGCATTGAAACATCGGTATTACCTCTATCTGAGCATCCGTACTTATATCCACCAAGCG
AACGGGTTTCTGGATTGAGAGAGATCGTGACCCACCCTAACTACATAATCCTGTACAGAGTAGCTGCTTCAAGCATTGAG
ATTGTAAGCGTGACACATTCTCGGCGACAATTTCCCTTCTCTATCTGA

Antitoxin


Download         Length: 64 a.a.        Molecular weight: 7025.80 Da        Isoelectric Point: 4.0270

>AT116720 WP_000536233.1 NZ_CP034801:165654-165845 [Escherichia coli]
MGTALSPIVSEFETTEQENSYNEWLRTKVTSSLADTRPAIPHDEVMAEMENLIAQIAVTNKSE

Download         Length: 192 bp

>AT116720 NZ_CP034801:165654-165845 [Escherichia coli]
ATGGGTACAGCCCTTTCTCCGATAGTTTCAGAATTCGAAACTACCGAACAAGAAAACAGTTACAACGAATGGTTGCGCAC
TAAAGTAACGTCAAGCCTTGCAGACACTCGCCCCGCAATTCCACATGACGAGGTAATGGCTGAAATGGAAAATCTTATTG
CTCAAATTGCTGTAACTAACAAGAGCGAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References