Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4439150..4439421 | Replicon | chromosome |
| Accession | NZ_CP034799 | ||
| Organism | Escherichia coli strain 2009C-4687 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4439280..4439383 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4439150..4439421 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A0I37_RS22190 | 4435705..4436367 | - | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
| A0I37_RS22195 | 4436391..4437047 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| A0I37_RS22200 | 4437149..4437379 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A0I37_RS22205 | 4437518..4437892 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| A0I37_RS22210 | 4437896..4438768 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| A0I37_RS22215 | 4438781..4439122 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 4439150..4439421 | - | 272 | - | - | Antitoxin |
| - | 4439280..4439383 | + | 104 | - | - | Toxin |
| A0I37_RS22220 | 4439518..4440174 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| A0I37_RS22225 | 4440175..4440366 | - | 192 | WP_001296140.1 | YebW family protein | - |
| A0I37_RS22230 | 4440471..4440707 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| A0I37_RS22235 | 4440825..4442264 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T116704 NZ_CP034799:4439280-4439383 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT116704 NZ_CP034799:c4439421-4439150 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
