Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/-
Location 2597546..2598177 Replicon chromosome
Accession NZ_CP034797
Organism Escherichia coli strain 08-3918

Toxin (Protein)


Gene name hicA Uniprot ID U9Y2A7
Locus tag AYP37_RS14130 Protein ID WP_001259385.1
Coordinates 2597902..2598177 (-) Length 92 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID U9Y7E1
Locus tag AYP37_RS14125 Protein ID WP_000593555.1
Coordinates 2597546..2597905 (-) Length 120 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AYP37_RS14095 2592658..2593131 + 474 WP_001161553.1 PTS sugar transporter subunit IIA -
AYP37_RS14100 2593128..2593409 + 282 WP_000084025.1 PTS sugar transporter subunit IIB -
AYP37_RS14105 2593486..2594844 + 1359 WP_001302220.1 PTS galactitol transporter subunit IIC -
AYP37_RS14110 2594837..2596345 + 1509 WP_001301773.1 carbohydrate kinase -
AYP37_RS14115 2596335..2596604 + 270 WP_000933060.1 HPr family phosphocarrier protein -
AYP37_RS14120 2596636..2597496 + 861 WP_001131788.1 class II aldolase -
AYP37_RS14125 2597546..2597905 - 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin Antitoxin
AYP37_RS14130 2597902..2598177 - 276 WP_001259385.1 type II toxin-antitoxin system HicA family toxin Toxin
AYP37_RS14135 2598250..2599374 - 1125 WP_001301659.1 ABC transporter permease -
AYP37_RS14140 2599374..2602109 - 2736 WP_000149107.1 ribosome-associated ATPase/putative transporter RbbA -
AYP37_RS14145 2602106..2603173 - 1068 WP_000361458.1 HlyD family secretion protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(30-80)

Antitoxin

Uncharacterised protein family HicB

(60-112)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10199.94 Da        Isoelectric Point: 10.7076

>T116662 WP_001259385.1 NZ_CP034797:c2598177-2597902 [Escherichia coli]
MRTKVQALRKKQKNTLDQIFKTPVPQGIKWSDIESLVKALGGEIKEGRGSRCKFILNMSVACFHRPHPSPDTDKGAVESV
RDWLLSIGVKP

Download         Length: 276 bp

>T116662 NZ_CP034797:c2598177-2597902 [Escherichia coli]
ATGAGAACCAAGGTACAGGCTTTACGGAAGAAACAAAAAAATACATTGGATCAAATATTTAAAACTCCTGTTCCTCAAGG
GATCAAGTGGTCTGATATAGAGTCACTGGTTAAAGCATTAGGCGGAGAAATTAAGGAAGGAAGAGGTTCGCGTTGTAAGT
TCATACTAAATATGAGCGTTGCGTGTTTCCATCGGCCTCATCCGTCGCCAGATACCGATAAAGGCGCTGTAGAAAGCGTG
CGTGACTGGTTACTAAGTATAGGGGTAAAACCATGA

Antitoxin


Download         Length: 120 a.a.        Molecular weight: 13402.27 Da        Isoelectric Point: 5.1987

>AT116662 WP_000593555.1 NZ_CP034797:c2597905-2597546 [Escherichia coli]
MIKLKTPNSMEIAGQPAVITYVPELNAFRGKFLGLSGYCDFVSDSIQGLQKEGELSLREYLEDCKAAGIEPYARTEKIKT
FTLRYPESLSERLNNAAAQQQVSVNTYIIETLNERLNHL

Download         Length: 360 bp

>AT116662 NZ_CP034797:c2597905-2597546 [Escherichia coli]
ATGATCAAACTGAAGACGCCAAACTCTATGGAGATTGCCGGGCAACCTGCTGTTATCACTTACGTGCCAGAACTGAATGC
ATTTCGTGGCAAATTCCTGGGCTTGTCAGGTTATTGTGATTTTGTCTCTGACAGCATTCAGGGGCTGCAAAAAGAAGGGG
AACTTTCCCTGCGAGAGTATCTTGAGGATTGTAAAGCTGCGGGTATTGAGCCGTATGCGCGTACAGAAAAGATTAAGACC
TTTACGTTACGCTATCCAGAATCGCTGAGTGAACGCCTTAATAATGCGGCTGCGCAGCAACAAGTCTCTGTTAATACCTA
TATTATTGAAACACTGAATGAGCGTTTGAATCATTTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A4P7TTW8

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9LKZ6

References