Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 702691..702962 | Replicon | chromosome |
| Accession | NZ_CP034797 | ||
| Organism | Escherichia coli strain 08-3918 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 702729..702832 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 702691..702962 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AYP37_RS04255 | 699848..701287 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AYP37_RS04260 | 701405..701641 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AYP37_RS04265 | 701746..701937 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AYP37_RS04270 | 701938..702594 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 702691..702962 | + | 272 | - | - | Antitoxin |
| - | 702729..702832 | - | 104 | - | - | Toxin |
| AYP37_RS04275 | 702990..703331 | - | 342 | WP_000976483.1 | YebY family protein | - |
| AYP37_RS04280 | 703344..704216 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| AYP37_RS04285 | 704220..704594 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| AYP37_RS04290 | 704733..704963 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AYP37_RS04295 | 705065..705721 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| AYP37_RS04300 | 705745..706407 | + | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T116647 NZ_CP034797:c702832-702729 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT116647 NZ_CP034797:702691-702962 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
