Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2162685..2162956 | Replicon | chromosome |
| Accession | NZ_CP034794 | ||
| Organism | Escherichia coli strain 06-3462 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2162723..2162826 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2162685..2162956 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A1D74_RS11130 | 2159842..2161281 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| A1D74_RS11135 | 2161399..2161635 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| A1D74_RS11140 | 2161740..2161931 | + | 192 | WP_001296140.1 | YebW family protein | - |
| A1D74_RS11145 | 2161932..2162588 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2162685..2162956 | + | 272 | - | - | Antitoxin |
| - | 2162723..2162826 | - | 104 | - | - | Toxin |
| A1D74_RS11150 | 2162984..2163325 | - | 342 | WP_000976483.1 | YebY family protein | - |
| A1D74_RS11155 | 2163338..2164210 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| A1D74_RS11160 | 2164214..2164588 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| A1D74_RS11165 | 2164727..2164957 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A1D74_RS11170 | 2165059..2165715 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| A1D74_RS11175 | 2165739..2166401 | + | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T116614 NZ_CP034794:c2162826-2162723 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT116614 NZ_CP034794:2162685-2162956 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
