Detailed information of TA system TA116592

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): ccdAB/CcdA(antitoxin)
• Location: 3734799..3735349
• Replicon: chromosome
• Accession: NZ_CP034792
• Organism: Escherichia coli strain 2009C-3378

Toxin (Protein)

• Gene name: ccdB
• Uniprot ID: D3H432
• Locus tag: DR788_RS19415
• Protein ID: WP_001160975.1
• Coordinates: 3734799..3735113 (-)
• Length: 105 a.a.

Antitoxin (Protein)

• Gene name: ccdA
• Uniprot ID: V0VEX8
• Locus tag: DR788_RS19420
• Protein ID: WP_000125566.1
• Coordinates: 3735116..3735349 (-)
• Length: 78 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
DR788_RS19390	3730474..3731760	+	1287	WP_000800457.1	peptidylprolyl isomerase SurA	-
DR788_RS19395	3731760..3732749	+	990	WP_000241259.1	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	-
DR788_RS19400	3732746..3733567	+	822	WP_001065380.1	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	-
DR788_RS19405	3733570..3733947	+	378	WP_000610901.1	Co2+/Mg2+ efflux protein ApaG	-
DR788_RS19410	3733954..3734802	+	849	WP_000257187.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH	-
DR788_RS19415	3734799..3735113	-	315	WP_001160975.1	CcdB family protein	Toxin
DR788_RS19420	3735116..3735349	-	234	WP_000125566.1	type II toxin-antitoxin system CcdA family antitoxin	Antitoxin
DR788_RS19425	3735435..3735914	-	480	WP_000624372.1	type 3 dihydrofolate reductase	-
DR788_RS19430	3736106..3737968	-	1863	WP_000377184.1	glutathione-regulated potassium-efflux system protein KefC	-
DR788_RS19435	3737961..3738491	-	531	WP_000600700.1	glutathione-regulated potassium-efflux system oxidoreductase KefF	-
DR788_RS19440	3738599..3739930	-	1332	WP_001183177.1	MFS transporter	-
DR788_RS19445	3739988..3740275	-	288	WP_000203741.1	ferredoxin-like protein FixX	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin CcdB (2-103)

Antitoxin

• Post-segregation antitoxin CcdA (8-77)

Sequences

Toxin

Protein

• Length: 105 a.a.
• Molecular weight: 11711.76 Da
• Isoelectric Point: 9.8517

>T116592 WP_001160975.1 NZ_CP034792:c3735113-3734799 [Escherichia coli]
MQFTVYRSRSRNAAFPFVIDVTSDIIGVINRRIVIPLTPIERFSRIRPPERLNPILLLVDGKEYVLMTHETATVPVNALG
TKFCDASAHRTLIKGALDFMLDGI

Nucleotide

• Length: 315 bp

>T116592 NZ_CP034792:c3735113-3734799 [Escherichia coli]
ATGCAATTTACGGTATACCGCAGTCGCAGCAGGAACGCCGCGTTTCCCTTTGTTATCGATGTTACCAGCGACATTATTGG
TGTGATTAATCGCCGTATTGTTATTCCATTAACACCTATTGAACGATTTAGCCGTATTCGCCCACCAGAACGGCTTAACC
CAATCCTTTTACTGGTAGACGGCAAAGAATATGTGCTCATGACGCATGAGACTGCAACTGTTCCAGTTAACGCGCTGGGA
ACGAAATTTTGCGATGCCAGCGCGCACCGAACGTTGATTAAAGGAGCATTAGATTTTATGCTCGACGGGATTTAA

Antitoxin

Protein

• Length: 78 a.a.
• Molecular weight: 8530.53 Da
• Isoelectric Point: 5.8062

>AT116592 WP_000125566.1 NZ_CP034792:c3735349-3735116 [Escherichia coli]
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLTVALNAELKKHAATRWREENAEAIAALNQLADETGCFSDEYRSF

Nucleotide

• Length: 234 bp

>AT116592 NZ_CP034792:c3735349-3735116 [Escherichia coli]
ATGACTGCAAAACGTACCACACAAAGTGTGACCGTCACCGTCGACCGTGAGTTAGTCAATCGCGCTCGTGATGCAGGCTT
AAATATGAGCGCCACCCTTACGGTTGCGCTCAATGCTGAACTTAAAAAACATGCAGCAACACGTTGGCGTGAAGAGAACG
CTGAAGCTATCGCTGCGTTAAATCAATTGGCTGATGAAACCGGATGTTTCTCTGATGAGTACCGGAGCTTCTAG

Structures

Antitoxin

• AlphaFold DB: A0A7U9LTM9