Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1402557..1402828 | Replicon | chromosome |
| Accession | NZ_CP034792 | ||
| Organism | Escherichia coli strain 2009C-3378 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1402687..1402790 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1402557..1402828 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DR788_RS07370 | 1399112..1399774 | - | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
| DR788_RS07375 | 1399798..1400454 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| DR788_RS07380 | 1400556..1400786 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DR788_RS07385 | 1400925..1401299 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| DR788_RS07390 | 1401303..1402175 | + | 873 | Protein_1393 | copper homeostasis membrane protein CopD | - |
| DR788_RS07395 | 1402188..1402529 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 1402557..1402828 | - | 272 | - | - | Antitoxin |
| - | 1402687..1402790 | + | 104 | - | - | Toxin |
| DR788_RS07400 | 1402925..1403581 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| DR788_RS07405 | 1403582..1403773 | - | 192 | WP_001296140.1 | YebW family protein | - |
| DR788_RS07410 | 1403878..1404114 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DR788_RS07415 | 1404232..1405671 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T116572 NZ_CP034792:1402687-1402790 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT116572 NZ_CP034792:c1402828-1402557 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
