Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1911731..1912002 | Replicon | chromosome |
| Accession | NZ_CP034784 | ||
| Organism | Escherichia coli strain ECZP248 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1911861..1911964 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1911731..1912002 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ENE68_RS09235 | 1908286..1908948 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| ENE68_RS09240 | 1908972..1909628 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| ENE68_RS09245 | 1909730..1909960 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ENE68_RS09250 | 1910099..1910473 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ENE68_RS09255 | 1910477..1911349 | + | 873 | WP_000879275.1 | copper homeostasis membrane protein CopD | - |
| ENE68_RS09260 | 1911362..1911703 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1911731..1912002 | - | 272 | - | - | Antitoxin |
| - | 1911861..1911964 | + | 104 | - | - | Toxin |
| ENE68_RS09265 | 1912099..1912755 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| ENE68_RS09270 | 1912756..1912947 | - | 192 | WP_001296140.1 | YebW family protein | - |
| ENE68_RS09275 | 1913052..1913288 | - | 237 | WP_001295499.1 | YebV family protein | - |
| ENE68_RS09280 | 1913406..1914845 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T116523 NZ_CP034784:1911861-1911964 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT116523 NZ_CP034784:c1912002-1911731 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
