Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 3895139..3895658 Replicon chromosome
Accession NZ_CP034783
Organism Pseudomonas sp. MPC6

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag ELQ88_RS20000 Protein ID WP_138967229.1
Coordinates 3895139..3895420 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag ELQ88_RS20005 Protein ID WP_138967231.1
Coordinates 3895410..3895658 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ELQ88_RS19970 3890521..3891285 - 765 WP_138967221.1 IclR family transcriptional regulator -
ELQ88_RS19975 3891363..3891752 - 390 WP_138967223.1 RidA family protein -
ELQ88_RS19980 3891782..3892573 - 792 WP_128872714.1 amino acid ABC transporter ATP-binding protein -
ELQ88_RS19985 3892570..3893232 - 663 WP_128872715.1 amino acid ABC transporter permease -
ELQ88_RS19990 3893242..3893904 - 663 WP_138967225.1 amino acid ABC transporter permease -
ELQ88_RS19995 3893956..3894804 - 849 WP_138967227.1 transporter substrate-binding domain-containing protein -
ELQ88_RS20000 3895139..3895420 - 282 WP_138967229.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
ELQ88_RS20005 3895410..3895658 - 249 WP_138967231.1 plasmid stabilization protein Antitoxin
ELQ88_RS20010 3895920..3897479 - 1560 WP_138967232.1 TerC family protein -
ELQ88_RS20015 3897895..3898761 - 867 WP_138967234.1 LysR family transcriptional regulator -
ELQ88_RS20020 3898927..3900465 + 1539 WP_138967236.1 MFS transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-81)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10881.59 Da        Isoelectric Point: 10.3313

>T116513 WP_138967229.1 NZ_CP034783:c3895420-3895139 [Pseudomonas sp. MPC6]
MTYELEFSDKAWKEWQKLGATLREQFKKKLQERLSSPHVPADRLNGLGNAYKIKLRNAGYRLVYRVVDEVLVVTVIAVGK
RERGEVYKDAEKR

Download         Length: 282 bp

>T116513 NZ_CP034783:c3895420-3895139 [Pseudomonas sp. MPC6]
ATGACCTATGAGTTGGAGTTTTCCGATAAGGCCTGGAAAGAGTGGCAAAAGCTTGGCGCAACGTTGAGGGAGCAGTTCAA
GAAAAAGTTGCAGGAGAGACTCTCAAGTCCCCACGTCCCGGCTGACCGGCTAAACGGTTTGGGGAATGCATACAAGATCA
AGCTCCGTAATGCCGGGTATCGGCTGGTGTACCGCGTGGTCGACGAGGTACTGGTAGTGACGGTGATAGCGGTGGGCAAG
CGTGAGCGCGGAGAAGTTTATAAGGACGCAGAAAAACGCTAG

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9005.42 Da        Isoelectric Point: 4.4000

>AT116513 WP_138967231.1 NZ_CP034783:c3895658-3895410 [Pseudomonas sp. MPC6]
MTHIVLSQVVASISELKKNPMGTVAAGGGLSVAILNRNEPAFYCVPAKEYEAMMDRLEDLELIALCRERENDPTIKVSLD
DL

Download         Length: 249 bp

>AT116513 NZ_CP034783:c3895658-3895410 [Pseudomonas sp. MPC6]
ATGACACATATCGTGCTTTCGCAAGTCGTCGCCAGCATTTCTGAACTCAAGAAAAACCCAATGGGAACAGTCGCCGCCGG
TGGTGGCTTGTCCGTCGCGATTCTTAACCGCAACGAGCCGGCTTTCTACTGCGTCCCAGCCAAAGAATATGAAGCGATGA
TGGATCGACTGGAAGACTTGGAGTTGATTGCCCTCTGCCGCGAACGAGAAAACGATCCAACGATCAAGGTTTCTCTCGAT
GACCTATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References