Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1978142..1978287 | Replicon | chromosome |
| Accession | NZ_CP034778 | ||
| Organism | Klebsiella pneumoniae strain 18CPO060 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1978178..1978280 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1978142..1978287 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ENZ43_RS11705 | 1973272..1975332 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| ENZ43_RS11710 | 1975336..1975995 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| ENZ43_RS11715 | 1976074..1976304 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| ENZ43_RS11720 | 1976417..1976791 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| ENZ43_RS11725 | 1976795..1977664 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| ENZ43_RS11730 | 1977681..1978019 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1978142..1978287 | - | 146 | - | - | Antitoxin |
| - | 1978178..1978280 | + | 103 | - | - | Toxin |
| ENZ43_RS28000 | 1978654..1978797 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| ENZ43_RS11740 | 1978902..1979870 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| ENZ43_RS11745 | 1980027..1980680 | + | 654 | WP_004189273.1 | protein-serine/threonine phosphatase | - |
| ENZ43_RS11750 | 1980677..1980868 | - | 192 | WP_002911395.1 | YebW family protein | - |
| ENZ43_RS11755 | 1980966..1981205 | - | 240 | WP_002911393.1 | YebV family protein | - |
| ENZ43_RS11760 | 1981321..1982754 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T116494 NZ_CP034778:1978178-1978280 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT116494 NZ_CP034778:c1978287-1978142 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
