Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1932971..1933116 | Replicon | chromosome |
| Accession | NZ_CP034760 | ||
| Organism | Klebsiella pneumoniae strain NB5306 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1933007..1933109 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1932971..1933116 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EMI85_RS09690 | 1928101..1930161 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| EMI85_RS09695 | 1930165..1930824 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| EMI85_RS09700 | 1930903..1931133 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| EMI85_RS09705 | 1931246..1931620 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| EMI85_RS09710 | 1931624..1932493 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| EMI85_RS09715 | 1932510..1932848 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1932971..1933116 | - | 146 | - | - | Antitoxin |
| - | 1933007..1933109 | + | 103 | - | - | Toxin |
| EMI85_RS27375 | 1933485..1933628 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| EMI85_RS09725 | 1933733..1934701 | - | 969 | WP_073971755.1 | VirK/YbjX family protein | - |
| EMI85_RS09730 | 1934858..1935511 | + | 654 | WP_032441330.1 | protein-serine/threonine phosphatase | - |
| EMI85_RS09735 | 1935508..1935699 | - | 192 | WP_002911395.1 | YebW family protein | - |
| EMI85_RS09740 | 1935797..1936036 | - | 240 | WP_002911393.1 | YebV family protein | - |
| EMI85_RS09745 | 1936152..1937585 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T116458 NZ_CP034760:1933007-1933109 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT116458 NZ_CP034760:c1933116-1932971 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
