Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2774250..2774451 | Replicon | chromosome |
| Accession | NZ_CP034754 | ||
| Organism | Enterobacter hormaechei subsp. hoffmannii strain Eh1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2774255..2774358 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2774250..2774451 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EM861_RS13395 | 2770518..2771960 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EM861_RS13400 | 2772065..2772304 | + | 240 | WP_006811010.1 | YebV family protein | - |
| EM861_RS13405 | 2772339..2772983 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| EM861_RS13410 | 2773151..2774131 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| EM861_RS13415 | 2774177..2774374 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2774250..2774451 | + | 202 | - | - | Antitoxin |
| - | 2774255..2774358 | - | 104 | - | - | Toxin |
| EM861_RS13420 | 2774500..2774838 | - | 339 | WP_022648464.1 | YebY family protein | - |
| EM861_RS13425 | 2774855..2775724 | - | 870 | WP_022648465.1 | copper homeostasis membrane protein CopD | - |
| EM861_RS13430 | 2775726..2776097 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| EM861_RS13435 | 2776235..2776465 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| EM861_RS13440 | 2776577..2777215 | + | 639 | WP_022648467.1 | carbon-nitrogen hydrolase family protein | - |
| EM861_RS13445 | 2777240..2777902 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T116440 NZ_CP034754:c2774358-2774255 [Enterobacter hormaechei subsp. hoffmannii]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT116440 NZ_CP034754:2774250-2774451 [Enterobacter hormaechei subsp. hoffmannii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
