Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1834820..1834967 | Replicon | chromosome |
| Accession | NZ_CP034678 | ||
| Organism | Klebsiella quasipneumoniae strain D120-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1834861..1834963 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1834820..1834967 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ELE18_RS09735 | 1829955..1832015 | + | 2061 | WP_094333683.1 | oligopeptidase B | - |
| ELE18_RS09740 | 1832019..1832678 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| ELE18_RS09745 | 1832757..1832987 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| ELE18_RS09750 | 1833100..1833474 | + | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| ELE18_RS09755 | 1833478..1834347 | + | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| ELE18_RS09760 | 1834364..1834702 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1834820..1834967 | - | 148 | - | - | Antitoxin |
| - | 1834861..1834963 | + | 103 | - | - | Toxin |
| ELE18_RS28415 | 1835351..1835494 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| ELE18_RS09770 | 1835598..1836566 | - | 969 | WP_127113430.1 | VirK/YbjX family protein | - |
| ELE18_RS09775 | 1836723..1837376 | + | 654 | WP_032456309.1 | protein-serine/threonine phosphatase | - |
| ELE18_RS09780 | 1837373..1837564 | - | 192 | WP_002911395.1 | YebW family protein | - |
| ELE18_RS09785 | 1837662..1837901 | - | 240 | WP_002911393.1 | YebV family protein | - |
| ELE18_RS09790 | 1838018..1839451 | - | 1434 | WP_032456308.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T116365 NZ_CP034678:1834861-1834963 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT116365 NZ_CP034678:c1834967-1834820 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
