Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) tacT-ataR/DUF1778(antitoxin)
Location 2287324..2288087 Replicon chromosome
Accession NZ_CP034657
Organism Xanthomonas vasicola strain NCPPB 902

Toxin (Protein)


Gene name tacT Uniprot ID -
Locus tag NX08_RS10670 Protein ID WP_206500714.1
Coordinates 2287324..2287812 (-) Length 163 a.a.

Antitoxin (Protein)


Gene name ataR Uniprot ID -
Locus tag NX08_RS10675 Protein ID WP_042505793.1
Coordinates 2287815..2288087 (-) Length 91 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NX08_RS10635 2283201..2283974 + 774 WP_039443026.1 P-type conjugative transfer protein TrbJ -
NX08_RS10640 2283981..2284172 + 192 WP_039442986.1 hypothetical protein -
NX08_RS10645 2284169..2285623 + 1455 WP_039442988.1 P-type conjugative transfer protein TrbL -
NX08_RS10650 2285695..2285922 + 228 WP_039442990.1 type I toxin-antitoxin system ptaRNA1 family toxin -
NX08_RS10655 2285924..2286127 - 204 WP_039442992.1 hypothetical protein -
NX08_RS10660 2286295..2286738 + 444 WP_206500710.1 hypothetical protein -
NX08_RS10665 2286807..2287127 + 321 WP_039443029.1 hypothetical protein -
NX08_RS10670 2287324..2287812 - 489 WP_206500714.1 GNAT family N-acetyltransferase Toxin
NX08_RS10675 2287815..2288087 - 273 WP_042505793.1 DUF1778 domain-containing protein Antitoxin
NX08_RS10685 2288525..2291131 + 2607 WP_039442996.1 AAA family ATPase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

GNAT domain

(69-146)

Antitoxin

Vibrio phage ICP1, Orf50

(3-86)


Sequences

Toxin        


Download         Length: 163 a.a.        Molecular weight: 17704.38 Da        Isoelectric Point: 8.5286

>T116297 WP_206500714.1 NZ_CP034657:c2287812-2287324 [Xanthomonas vasicola]
MQLSAPQSLAVTHRLDGFNCGEPSLDDWLKRRALTNHLNGASRTFVVVDADECVLGYYALAAGAVAHQEATSAIRRNMPD
PVPVMVLARLAVDARAQGIKLGAALLQDAVTRVRSVAENAGVRALLVHALNERAKQFYEHYGFHASPMHSMTLMLPLKRH
PE

Download         Length: 489 bp

>T116297 NZ_CP034657:c2287812-2287324 [Xanthomonas vasicola]
ATGCAGCTTTCAGCACCGCAGTCGCTCGCCGTGACGCATCGGCTCGACGGGTTCAATTGCGGCGAGCCCTCGCTGGACGA
TTGGCTGAAACGGCGCGCACTGACAAACCATCTCAACGGGGCCAGCCGCACCTTCGTTGTGGTCGATGCCGACGAGTGCG
TGCTTGGGTATTACGCTTTGGCAGCAGGGGCGGTCGCGCACCAGGAAGCCACGAGTGCCATCCGGCGCAACATGCCTGAT
CCGGTACCGGTCATGGTGCTCGCAAGGCTCGCGGTGGATGCTCGCGCTCAAGGCATCAAGCTAGGTGCTGCCCTACTTCA
AGATGCCGTAACACGCGTGCGATCTGTCGCGGAAAATGCTGGTGTCCGGGCATTGCTCGTCCATGCGTTGAACGAGCGTG
CAAAACAATTCTACGAACATTACGGTTTTCATGCATCACCAATGCACTCAATGACCCTGATGCTTCCGCTGAAAAGACAC
CCGGAATAG

Antitoxin


Download         Length: 91 a.a.        Molecular weight: 10101.57 Da        Isoelectric Point: 5.0898

>AT116297 WP_042505793.1 NZ_CP034657:c2288087-2287815 [Xanthomonas vasicola]
MRDASINLRALPEQRDLIDHAANLLGKNRSDFMLEAACERAKTIVLDQVFFSLDEGRFRQFTALLDAPQEDIPGLDRLMA
VKAPWGTSKA

Download         Length: 273 bp

>AT116297 NZ_CP034657:c2288087-2287815 [Xanthomonas vasicola]
ATGCGTGACGCCTCCATTAACTTACGTGCGCTACCTGAGCAGCGCGACTTAATCGACCACGCGGCTAATCTGCTAGGCAA
GAATCGCTCAGACTTCATGCTGGAGGCTGCATGCGAGCGGGCGAAAACGATTGTGCTGGATCAGGTCTTTTTCAGTCTGG
ACGAGGGGCGGTTCCGGCAATTCACTGCGTTGCTCGATGCGCCACAAGAGGACATTCCGGGCCTTGATCGCCTGATGGCA
GTTAAGGCTCCGTGGGGCACGAGCAAGGCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References