Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YoeB-YefM
Location 977675..978180 Replicon chromosome
Accession NZ_CP034653
Organism Xanthomonas vasicola pv. arecae strain NCPPB 2649

Toxin (Protein)


Gene name relB Uniprot ID -
Locus tag NX80_RS04395 Protein ID WP_017118010.1
Coordinates 977675..977932 (-) Length 86 a.a.

Antitoxin (Protein)


Gene name relE Uniprot ID -
Locus tag NX80_RS04400 Protein ID WP_017118011.1
Coordinates 977929..978180 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NX80_RS04370 973332..974687 + 1356 WP_047698223.1 aminodeoxychorismate synthase component I -
NX80_RS04375 974748..975821 + 1074 WP_010368412.1 endolytic transglycosylase MltG -
NX80_RS04380 975818..976777 + 960 WP_010368413.1 DNA polymerase III subunit delta' -
NX80_RS04385 976774..977124 + 351 WP_047698222.1 PilZ domain-containing protein -
NX80_RS04395 977675..977932 - 258 WP_017118010.1 Txe/YoeB family addiction module toxin Toxin
NX80_RS04400 977929..978180 - 252 WP_017118011.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
NX80_RS04405 978362..978688 + 327 WP_010379011.1 hypothetical protein -
NX80_RS04410 978928..980529 - 1602 WP_047698230.1 propionate catabolism operon regulatory protein PrpR -
NX80_RS04415 980675..981571 + 897 WP_010368419.1 methylisocitrate lyase -
NX80_RS04420 981603..982199 + 597 WP_010368420.1 DUF1003 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(2-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 9953.41 Da        Isoelectric Point: 8.0395

>T116289 WP_017118010.1 NZ_CP034653:c977932-977675 [Xanthomonas vasicola pv. arecae]
VILQFSDNAWEDSLYWQQADKKILKRISELINAIQCDPFQGIGKPEPLRHALAGYWSRRINDEHRIVYKAAEGILLIAQV
RYHYA

Download         Length: 258 bp

>T116289 NZ_CP034653:c977932-977675 [Xanthomonas vasicola pv. arecae]
GTGATCCTCCAGTTCTCGGATAATGCCTGGGAGGACTCTCTGTACTGGCAGCAGGCCGACAAGAAGATCCTCAAACGCAT
CAGCGAATTGATCAACGCCATTCAGTGCGATCCGTTCCAAGGCATCGGCAAACCCGAGCCACTGCGCCACGCGCTAGCGG
GTTATTGGTCGCGCCGCATCAATGACGAACACCGAATCGTCTACAAAGCCGCAGAAGGAATACTACTGATCGCCCAGGTG
CGTTATCACTATGCATAG

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9225.60 Da        Isoelectric Point: 7.0120

>AT116289 WP_017118011.1 NZ_CP034653:c978180-977929 [Xanthomonas vasicola pv. arecae]
MNIITYSAARASLAETMDRVVNDHEPVIITRSGERAVVMMSLDDYKAMKETAYLLRSPKSAQRLLESIAQLEAGRGKERG
LAE

Download         Length: 252 bp

>AT116289 NZ_CP034653:c978180-977929 [Xanthomonas vasicola pv. arecae]
ATGAATATCATCACCTACAGCGCCGCGCGCGCCTCTCTCGCAGAGACCATGGACCGCGTTGTCAACGACCACGAGCCAGT
GATCATCACGCGCAGCGGCGAACGAGCTGTCGTCATGATGTCCCTGGATGACTACAAGGCCATGAAGGAAACCGCCTACC
TGCTGCGCAGCCCGAAGAGTGCACAGCGCCTGCTGGAATCCATCGCCCAGCTTGAAGCCGGCCGCGGCAAGGAACGGGGA
CTGGCCGAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References