Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1820428..1820699 | Replicon | chromosome |
| Accession | NZ_CP034595 | ||
| Organism | Escherichia coli strain WCHEC035053S1G0 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1820558..1820661 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1820428..1820699 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DK245_RS08840 | 1816983..1817645 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| DK245_RS08845 | 1817669..1818325 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| DK245_RS08850 | 1818427..1818657 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DK245_RS08855 | 1818796..1819170 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| DK245_RS08860 | 1819174..1820046 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| DK245_RS08865 | 1820059..1820400 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1820428..1820699 | - | 272 | - | - | Antitoxin |
| - | 1820558..1820661 | + | 104 | - | - | Toxin |
| DK245_RS08870 | 1820796..1821452 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| DK245_RS08875 | 1821453..1821644 | - | 192 | WP_000457842.1 | YebW family protein | - |
| DK245_RS08880 | 1821749..1821985 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DK245_RS08885 | 1822103..1823542 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T116267 NZ_CP034595:1820558-1820661 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT116267 NZ_CP034595:c1820699-1820428 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
