Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2684514..2684785 | Replicon | chromosome |
| Accession | NZ_CP034589 | ||
| Organism | Escherichia coli strain L37 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2684552..2684655 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2684514..2684785 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKM58_RS13010 | 2681671..2683110 | + | 1440 | WP_063091473.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EKM58_RS13015 | 2683228..2683464 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| EKM58_RS13020 | 2683569..2683760 | + | 192 | WP_001338167.1 | YebW family protein | - |
| EKM58_RS13025 | 2683761..2684417 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 2684514..2684785 | + | 272 | - | - | Antitoxin |
| - | 2684552..2684655 | - | 104 | - | - | Toxin |
| EKM58_RS13030 | 2684813..2685154 | - | 342 | WP_000976472.1 | YebY family protein | - |
| EKM58_RS13035 | 2685167..2686039 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| EKM58_RS13040 | 2686043..2686417 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EKM58_RS13045 | 2686556..2686786 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EKM58_RS13050 | 2686888..2687544 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EKM58_RS13055 | 2687568..2688230 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T116237 NZ_CP034589:c2684655-2684552 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT116237 NZ_CP034589:2684514-2684785 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
