Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3050115..3050205 Replicon chromosome
Accession NZ_CP034482
Organism Rahnella aquatilis strain KM12

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3050116..3050205 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3050115..3050205 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EJP81_RS13915 3045243..3047222 + 1980 WP_126124992.1 MBL fold metallo-hydrolase -
EJP81_RS13920 3047281..3048069 + 789 WP_119261800.1 hypothetical protein -
EJP81_RS13925 3048270..3049181 - 912 WP_119261801.1 cation diffusion facilitator family transporter -
EJP81_RS13935 3049847..3049999 + 153 WP_072012305.1 tyrosine-type recombinase/integrase -
- 3050115..3050205 + 91 - - Antitoxin
- 3050116..3050205 - 90 - - Toxin
EJP81_RS13940 3050361..3050696 - 336 WP_013576173.1 YebY family protein -
EJP81_RS13945 3050748..3051632 - 885 WP_037037430.1 copper homeostasis membrane protein CopD -
EJP81_RS13950 3051636..3052019 - 384 WP_013576175.1 copper homeostasis periplasmic binding protein CopC -
EJP81_RS13955 3052161..3052667 - 507 WP_013576176.1 non-heme ferritin -
EJP81_RS13960 3053074..3053304 + 231 WP_013576177.1 DNA polymerase III subunit theta -
EJP81_RS13965 3053324..3054280 - 957 WP_013576178.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 90 bp

>T116140 NZ_CP034482:c3050205-3050116 [Rahnella aquatilis]
GCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCG
GTCTTTTTTT

Antitoxin


Download         Length: 91 bp

>AT116140 NZ_CP034482:3050115-3050205 [Rahnella aquatilis]
TAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGC

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References